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ZNF518B (zinc finger protein 518B)

Identity

Alias_symbol (synonym)KIAA1729
Other alias-
HGNC (Hugo) ZNF518B
LocusID (NCBI) 85460
Atlas_Id 76205
Location 4p16.1  [Link to chromosome band 4p16]
Location_base_pair Starts at 10441504 and ends at 10459032 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
ZNF518B (4p16.1) / ZNF518B (4p16.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF518B   29365
Cards
Entrez_Gene (NCBI)ZNF518B  85460  zinc finger protein 518B
Aliases
GeneCards (Weizmann)ZNF518B
Ensembl hg19 (Hinxton)ENSG00000178163 [Gene_View]  chr4:10441504-10459032 [Contig_View]  ZNF518B [Vega]
Ensembl hg38 (Hinxton)ENSG00000178163 [Gene_View]  chr4:10441504-10459032 [Contig_View]  ZNF518B [Vega]
ICGC DataPortalENSG00000178163
TCGA cBioPortalZNF518B
AceView (NCBI)ZNF518B
Genatlas (Paris)ZNF518B
WikiGenes85460
SOURCE (Princeton)ZNF518B
Genetics Home Reference (NIH)ZNF518B
Genomic and cartography
GoldenPath hg19 (UCSC)ZNF518B  -     chr4:10441504-10459032 -  4p16.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ZNF518B  -     4p16.1   [Description]    (hg38-Dec_2013)
EnsemblZNF518B - 4p16.1 [CytoView hg19]  ZNF518B - 4p16.1 [CytoView hg38]
Mapping of homologs : NCBIZNF518B [Mapview hg19]  ZNF518B [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB051516 AK058072 AK092268 AK122755 AL833306
RefSeq transcript (Entrez)NM_053042
RefSeq genomic (Entrez)NC_000004 NC_018915 NT_006316 NW_004929315
Consensus coding sequences : CCDS (NCBI)ZNF518B
Cluster EST : UnigeneHs.455089 [ NCBI ]
CGAP (NCI)Hs.455089
Alternative Splicing GalleryENSG00000178163
Gene ExpressionZNF518B [ NCBI-GEO ]   ZNF518B [ EBI - ARRAY_EXPRESS ]   ZNF518B [ SEEK ]   ZNF518B [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF518B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)85460
GTEX Portal (Tissue expression)ZNF518B
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9C0D4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9C0D4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9C0D4
Splice isoforms : SwissVarQ9C0D4
PhosPhoSitePlusQ9C0D4
Domaine pattern : Prosite (Expaxy)ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)C2H2_Znf_fam    Znf_518B    Znf_C2H2    Znf_C2H2-like   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF518B
DMDM Disease mutations85460
Blocks (Seattle)ZNF518B
SuperfamilyQ9C0D4
Human Protein AtlasENSG00000178163
Peptide AtlasQ9C0D4
HPRD13889
IPIIPI00304621   IPI00965058   
Protein Interaction databases
DIP (DOE-UCLA)Q9C0D4
IntAct (EBI)Q9C0D4
FunCoupENSG00000178163
BioGRIDZNF518B
STRING (EMBL)ZNF518B
ZODIACZNF518B
Ontologies - Pathways
QuickGOQ9C0D4
Ontology : AmiGOsequence-specific DNA binding RNA polymerase II transcription factor activity  DNA binding  nucleus  transcription, DNA-templated  regulation of transcription from RNA polymerase II promoter  metal ion binding  
Ontology : EGO-EBIsequence-specific DNA binding RNA polymerase II transcription factor activity  DNA binding  nucleus  transcription, DNA-templated  regulation of transcription from RNA polymerase II promoter  metal ion binding  
NDEx NetworkZNF518B
Atlas of Cancer Signalling NetworkZNF518B
Wikipedia pathwaysZNF518B
Orthology - Evolution
OrthoDB85460
GeneTree (enSembl)ENSG00000178163
Phylogenetic Trees/Animal Genes : TreeFamZNF518B
HOVERGENQ9C0D4
HOGENOMQ9C0D4
Homologs : HomoloGeneZNF518B
Homology/Alignments : Family Browser (UCSC)ZNF518B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF518B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF518B
dbVarZNF518B
ClinVarZNF518B
1000_GenomesZNF518B 
Exome Variant ServerZNF518B
ExAC (Exome Aggregation Consortium)ZNF518B (select the gene name)
Genetic variants : HAPMAP85460
Genomic Variants (DGV)ZNF518B [DGVbeta]
DECIPHER (Syndromes)4:10441504-10459032  ENSG00000178163
CONAN: Copy Number AnalysisZNF518B 
Mutations
ICGC Data PortalZNF518B 
TCGA Data PortalZNF518B 
Broad Tumor PortalZNF518B
OASIS PortalZNF518B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF518B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF518B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF518B
DgiDB (Drug Gene Interaction Database)ZNF518B
DoCM (Curated mutations)ZNF518B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF518B (select a term)
intoGenZNF518B
Cancer3DZNF518B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZNF518B
Genetic Testing Registry ZNF518B
NextProtQ9C0D4 [Medical]
TSGene85460
GENETestsZNF518B
Huge Navigator ZNF518B [HugePedia]
snp3D : Map Gene to Disease85460
BioCentury BCIQZNF518B
ClinGenZNF518B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD85460
Chemical/Pharm GKB GenePA162410199
Clinical trialZNF518B
Miscellaneous
canSAR (ICR)ZNF518B (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF518B
EVEXZNF518B
GoPubMedZNF518B
iHOPZNF518B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:53:13 CET 2017

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