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ZNF519 (zinc finger protein 519)

Identity

Alias_symbol (synonym)HsT2362
FLJ36809
Other alias
HGNC (Hugo) ZNF519
LocusID (NCBI) 162655
Atlas_Id 76206
Location 18p11.21  [Link to chromosome band 18p11]
Location_base_pair Starts at 14099943 and ends at 14132490 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ZNF519 (18p11.21) / YLPM1 (14q24.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF519   30574
Cards
Entrez_Gene (NCBI)ZNF519  162655  zinc finger protein 519
AliasesHsT2362
GeneCards (Weizmann)ZNF519
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr18:14099943-14132490 [Contig_View]  ZNF519 [Vega]
TCGA cBioPortalZNF519
AceView (NCBI)ZNF519
Genatlas (Paris)ZNF519
WikiGenes162655
SOURCE (Princeton)ZNF519
Genetics Home Reference (NIH)ZNF519
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF519  -     chr18:14099943-14132490 -  18p11.21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF519  -     18p11.21   [Description]    (hg19-Feb_2009)
EnsemblZNF519 - 18p11.21 [CytoView hg19]  ZNF519 - 18p11.21 [CytoView hg38]
Mapping of homologs : NCBIZNF519 [Mapview hg19]  ZNF519 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB209417 AK094128 AK096748 AK124851 BC010705
RefSeq transcript (Entrez)NM_145287
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF519
Cluster EST : UnigeneHs.352635 [ NCBI ]
CGAP (NCI)Hs.352635
Gene ExpressionZNF519 [ NCBI-GEO ]   ZNF519 [ EBI - ARRAY_EXPRESS ]   ZNF519 [ SEEK ]   ZNF519 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF519 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)162655
GTEX Portal (Tissue expression)ZNF519
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8TB69   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8TB69  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8TB69
Splice isoforms : SwissVarQ8TB69
PhosPhoSitePlusQ8TB69
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)    zf-C2H2 (PF00096)   
Domain families : Pfam (NCBI)pfam01352    pfam00096   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF519
DMDM Disease mutations162655
Blocks (Seattle)ZNF519
SuperfamilyQ8TB69
Peptide AtlasQ8TB69
HPRD15816
IPIIPI00152143   IPI00916445   
Protein Interaction databases
DIP (DOE-UCLA)Q8TB69
IntAct (EBI)Q8TB69
BioGRIDZNF519
STRING (EMBL)ZNF519
ZODIACZNF519
Ontologies - Pathways
QuickGOQ8TB69
Ontology : AmiGODNA binding  nucleus  transcription, DNA-templated  spermatogenesis  metal ion binding  negative regulation of transcription involved in meiotic cell cycle  
Ontology : EGO-EBIDNA binding  nucleus  transcription, DNA-templated  spermatogenesis  metal ion binding  negative regulation of transcription involved in meiotic cell cycle  
NDEx NetworkZNF519
Atlas of Cancer Signalling NetworkZNF519
Wikipedia pathwaysZNF519
Orthology - Evolution
OrthoDB162655
Phylogenetic Trees/Animal Genes : TreeFamZNF519
HOVERGENQ8TB69
HOGENOMQ8TB69
Homologs : HomoloGeneZNF519
Homology/Alignments : Family Browser (UCSC)ZNF519
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF519 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF519
dbVarZNF519
ClinVarZNF519
1000_GenomesZNF519 
Exome Variant ServerZNF519
ExAC (Exome Aggregation Consortium)ZNF519 (select the gene name)
Genetic variants : HAPMAP162655
Genomic Variants (DGV)ZNF519 [DGVbeta]
DECIPHERZNF519 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF519 
Mutations
ICGC Data PortalZNF519 
TCGA Data PortalZNF519 
Broad Tumor PortalZNF519
OASIS PortalZNF519 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF519  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF519
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF519
DgiDB (Drug Gene Interaction Database)ZNF519
DoCM (Curated mutations)ZNF519 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF519 (select a term)
intoGenZNF519
Cancer3DZNF519(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZNF519
Genetic Testing Registry ZNF519
NextProtQ8TB69 [Medical]
TSGene162655
GENETestsZNF519
Target ValidationZNF519
Huge Navigator ZNF519 [HugePedia]
snp3D : Map Gene to Disease162655
BioCentury BCIQZNF519
ClinGenZNF519
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD162655
Chemical/Pharm GKB GenePA134863605
Clinical trialZNF519
Miscellaneous
canSAR (ICR)ZNF519 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF519
EVEXZNF519
GoPubMedZNF519
iHOPZNF519
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 31 15:50:37 CEST 2017

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