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ZNF524 (zinc finger protein 524)

Identity

Alias_symbol (synonym)MGC23143
Other alias-
HGNC (Hugo) ZNF524
LocusID (NCBI) 147807
Atlas_Id 76207
Location 19q13.42  [Link to chromosome band 19q13]
Location_base_pair Starts at 55600340 and ends at 55603138 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
SRCAP (16p11.2) / ZNF524 (19q13.42)U2AF2 (19q13.42) / ZNF524 (19q13.42)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

4FONT COLOR=#00004F>Nomenclature
HGNC (Hugo)ZNF524   28322
Cards
Entrez_Gene (NCBI)ZNF524  147807  zinc finger protein 524
Aliases
GeneCards (Weizmann)ZNF524
Ensembl hg19 (Hinxton)ENSG00000171443 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000171443 [Gene_View]  chr19:55600340-55603138 [Contig_View]  ZNF524 [Vega]
ICGC DataPortalENSG00000171443
TCGA cBioPortalZNF524
AceView (NCBI)ZNF524
Genatlas (Paris)ZNF524
WikiGenes147807
SOURCE (Princeton)ZNF524
Genetics Home Reference (NIH)ZNF524
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF524  -     chr19:55600340-55603138 +  19q13.42   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF524  -     19q13.42   [Description]    (hg19-Feb_2009)
EnsemblZNF524 - 19q13.42 [CytoView hg19]  ZNF524 - 19q13.42 [CytoView hg38]
Mapping of homologs : NCBIZNF524 [Mapview hg19]  ZNF524 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC007396 BC014666 BC067748 BI756946 BM790568
RefSeq transcript (Entrez)NM_153219
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF524
Cluster EST : UnigeneHs.440291 [ NCBI ]
CGAP (NCI)Hs.440291
Alternative Splicing GalleryENSG00000171443
Gene ExpressionZNF524 [ NCBI-GEO ]   ZNF524 [ EBI - ARRAY_EXPRESS ]   ZNF524 [ SEEK ]   ZNF524 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF524 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)147807
GTEX Portal (Tissue expression)ZNF524
Human Protein AtlasENSG00000171443-ZNF524 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96C55   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96C55  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96C55
Splice isoforms : SwissVarQ96C55
PhosPhoSitePlusQ96C55
Domaine pattern : Prosite (Expaxy)ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)zf-C2H2_6 (PF13912)   
Domain families : Pfam (NCBI)pfam13912   
Domain families : Smart (EMBL)ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF524
DMDM Disease mutations147807
Blocks (Seattle)ZNF524
SuperfamilyQ96C55
Human Protein Atlas [tissue]ENSG00000171443-ZNF524 [tissue]
Peptide AtlasQ96C55
HPRD15817
IPIIPI00060270   
Protein Interaction databases
DIP (DOE-UCLA)Q96C55
IntAct (EBI)Q96C55
FunCoupENSG00000171443
BioGRIDZNF524
STRING (EMBL)ZNF524
ZODIACZNF524
Ontologies - Pathways
QuickGOQ96C55
Ontology : AmiGODNA binding  protein binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  protein binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF524
Atlas of Cancer Signalling NetworkZNF524
Wikipedia pathwaysZNF524
Orthology - Evolution
OrthoDB147807
GeneTree (enSembl)ENSG00000171443
Phylogenetic Trees/Animal Genes : TreeFamZNF524
HOVERGENQ96C55
HOGENOMQ96C55
Homologs : HomoloGeneZNF524
Homology/Alignments : Family Browser (UCSC)ZNF524
Gene fusions - Rearrangements
Fusion: Tumor Portal ZNF524
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF524 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF524
dbVarZNF524
ClinVarZNF524
1000_GenomesZNF524 
Exome Variant ServerZNF524
ExAC (Exome Aggregation Consortium)ENSG00000171443
GNOMAD BrowserENSG00000171443
Genetic variants : HAPMAP147807
Genomic Variants (DGV)ZNF524 [DGVbeta]
DECIPHERZNF524 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF524 
Mutations
ICGC Data PortalZNF524 
TCGA Data PortalZNF524 
Broad Tumor PortalZNF524
OASIS PortalZNF524 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF524  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF524
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF524
DgiDB (Drug Gene Interaction Database)ZNF524
DoCM (Curated mutations)ZNF524 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF524 (select a term)
intoGenZNF524
Cancer3DZNF524(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZNF524
Genetic Testing Registry ZNF524
NextProtQ96C55 [Medical]
TSGene147807
GENETestsZNF524
Target ValidationZNF524
Huge Navigator ZNF524 [HugePedia]
snp3D : Map Gene to Disease147807
BioCentury BCIQZNF524
ClinGenZNF524
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD147807
Chemical/Pharm GKB GenePA134981576
Clinical trialZNF524
Miscellaneous
canSAR (ICR)ZNF524 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF524
EVEXZNF524
GoPubMedZNF524
iHOPZNF524
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 12:37:17 CET 2017

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