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ZNF530 (zinc finger protein 530)

Identity

Alias_symbol (synonym)KIAA1508
Other alias-
HGNC (Hugo) ZNF530
LocusID (NCBI) 348327
Atlas_Id 76215
Location 19q13.43  [Link to chromosome band 19q13]
Location_base_pair Starts at 57599885 and ends at 57610098 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF530   29297
Cards
Entrez_Gene (NCBI)ZNF530  348327  zinc finger protein 530
Aliases
GeneCards (Weizmann)ZNF530
Ensembl hg19 (Hinxton)ENSG00000183647 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000183647 [Gene_View]  chr19:57599885-57610098 [Contig_View]  ZNF530 [Vega]
ICGC DataPortalENSG00000183647
TCGA cBioPortalZNF530
AceView (NCBI)ZNF530
Genatlas (Paris)ZNF530
WikiGenes348327
SOURCE (Princeton)ZNF530
Genetics Home Reference (NIH)ZNF530
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF530  -     chr19:57599885-57610098 +  19q13.43   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF530  -     19q13.43   [Description]    (hg19-Feb_2009)
EnsemblZNF530 - 19q13.43 [CytoView hg19]  ZNF530 - 19q13.43 [CytoView hg38]
Mapping of homologs : NCBIZNF530 [Mapview hg19]  ZNF530 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB040941 AK096831 AL832740 BC060865 BX106478
RefSeq transcript (Entrez)NM_001321981 NM_020880
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF530
Cluster EST : UnigeneHs.662177 [ NCBI ]
CGAP (NCI)Hs.662177
Alternative Splicing GalleryENSG00000183647
Gene ExpressionZNF530 [ NCBI-GEO ]   ZNF530 [ EBI - ARRAY_EXPRESS ]   ZNF530 [ SEEK ]   ZNF530 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF530 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)348327
GTEX Portal (Tissue expression)ZNF530
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6P9A1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6P9A1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6P9A1
Splice isoforms : SwissVarQ6P9A1
PhosPhoSitePlusQ6P9A1
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)    zf-C2H2 (PF00096)    zf-C2H2_6 (PF13912)   
Domain families : Pfam (NCBI)pfam01352    pfam00096    pfam13912   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF530
DMDM Disease mutations348327
Blocks (Seattle)ZNF530
SuperfamilyQ6P9A1
Human Protein AtlasENSG00000183647
Peptide AtlasQ6P9A1
HPRD15822
IPIIPI00383660   
Protein Interaction databases
DIP (DOE-UCLA)Q6P9A1
IntAct (EBI)Q6P9A1
FunCoupENSG00000183647
BioGRIDZNF530
STRING (EMBL)ZNF530
ZODIACZNF530
Ontologies - Pathways
QuickGOQ6P9A1
Ontology : AmiGODNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF530
Atlas of Cancer Signalling NetworkZNF530
Wikipedia pathwaysZNF530
Orthology - Evolution
OrthoDB348327
GeneTree (enSembl)ENSG00000183647
Phylogenetic Trees/Animal Genes : TreeFamZNF530
HOVERGENQ6P9A1
HOGENOMQ6P9A1
Homologs : HomoloGeneZNF530
Homology/Alignments : Family Browser (UCSC)ZNF530
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF530 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF530
dbVarZNF530
ClinVarZNF530
1000_GenomesZNF530 
Exome Variant ServerZNF530
ExAC (Exome Aggregation Consortium)ZNF530 (select the gene name)
Genetic variants : HAPMAP348327
Genomic Variants (DGV)ZNF530 [DGVbeta]
DECIPHERZNF530 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF530 
Mutations
ICGC Data PortalZNF530 
TCGA Data PortalZNF530 
Broad Tumor PortalZNF530
OASIS PortalZNF530 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF530  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF530
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF530
DgiDB (Drug Gene Interaction Database)ZNF530
DoCM (Curated mutations)ZNF530 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF530 (select a term)
intoGenZNF530
Cancer3DZNF530(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZNF530
Genetic Testing Registry ZNF530
NextProtQ6P9A1 [Medical]
TSGene348327
GENETestsZNF530
Target ValidationZNF530
Huge Navigator ZNF530 [HugePedia]
snp3D : Map Gene to Disease348327
BioCentury BCIQZNF530
ClinGenZNF530
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD348327
Chemical/Pharm GKB GenePA134892909
Clinical trialZNF530
Miscellaneous
canSAR (ICR)ZNF530 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF530
EVEXZNF530
GoPubMedZNF530
iHOPZNF530
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:50:39 CEST 2017

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