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ZNF534 (zinc finger protein 534)

Identity

Alias_namesKRBO3
KRAB domain only 3
Alias_symbol (synonym)FLJ25344
Other alias
HGNC (Hugo) ZNF534
LocusID (NCBI) 147658
Atlas_Id 76217
Location 19q13.41  [Link to chromosome band 19q13]
Location_base_pair Starts at 52934667 and ends at 52942699 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF534   26337
Cards
Entrez_Gene (NCBI)ZNF534  147658  zinc finger protein 534
AliasesKRBO3
GeneCards (Weizmann)ZNF534
Ensembl hg19 (Hinxton)ENSG00000198633 [Gene_View]  chr19:52934667-52942699 [Contig_View]  ZNF534 [Vega]
Ensembl hg38 (Hinxton)ENSG00000198633 [Gene_View]  chr19:52934667-52942699 [Contig_View]  ZNF534 [Vega]
ICGC DataPortalENSG00000198633
TCGA cBioPortalZNF534
AceView (NCBI)ZNF534
Genatlas (Paris)ZNF534
WikiGenes147658
SOURCE (Princeton)ZNF534
Genetics Home Reference (NIH)ZNF534
Genomic and cartography
GoldenPath hg19 (UCSC)ZNF534  -     chr19:52934667-52942699 +  19q13.41   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ZNF534  -     19q13.41   [Description]    (hg38-Dec_2013)
EnsemblZNF534 - 19q13.41 [CytoView hg19]  ZNF534 - 19q13.41 [CytoView hg38]
Mapping of homologs : NCBIZNF534 [Mapview hg19]  ZNF534 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB086839 AB086840
RefSeq transcript (Entrez)NM_001143938 NM_001143939 NM_001291368 NM_001291369 NM_182512
RefSeq genomic (Entrez)NC_000019 NC_018930 NT_011109 NW_004929415
Consensus coding sequences : CCDS (NCBI)ZNF534
Cluster EST : UnigeneHs.447583 [ NCBI ]
CGAP (NCI)Hs.447583
Alternative Splicing GalleryENSG00000198633
Gene ExpressionZNF534 [ NCBI-GEO ]   ZNF534 [ EBI - ARRAY_EXPRESS ]   ZNF534 [ SEEK ]   ZNF534 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF534 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)147658
GTEX Portal (Tissue expression)ZNF534
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ76KX8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ76KX8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ76KX8
Splice isoforms : SwissVarQ76KX8
PhosPhoSitePlusQ76KX8
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Krueppel-associated_box    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)   
Domain families : Pfam (NCBI)pfam01352   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF534
DMDM Disease mutations147658
Blocks (Seattle)ZNF534
SuperfamilyQ76KX8
Human Protein AtlasENSG00000198633
Peptide AtlasQ76KX8
IPIIPI00456629   IPI00921251   IPI00941495   IPI01010234   IPI00065096   
Protein Interaction databases
DIP (DOE-UCLA)Q76KX8
IntAct (EBI)Q76KX8
FunCoupENSG00000198633
BioGRIDZNF534
STRING (EMBL)ZNF534
ZODIACZNF534
Ontologies - Pathways
QuickGOQ76KX8
Ontology : AmiGODNA binding  sequence-specific DNA binding transcription factor activity  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  sequence-specific DNA binding transcription factor activity  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF534
Atlas of Cancer Signalling NetworkZNF534
Wikipedia pathwaysZNF534
Orthology - Evolution
OrthoDB147658
GeneTree (enSembl)ENSG00000198633
Phylogenetic Trees/Animal Genes : TreeFamZNF534
HOVERGENQ76KX8
HOGENOMQ76KX8
Homologs : HomoloGeneZNF534
Homology/Alignments : Family Browser (UCSC)ZNF534
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF534 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF534
dbVarZNF534
ClinVarZNF534
1000_GenomesZNF534 
Exome Variant ServerZNF534
ExAC (Exome Aggregation Consortium)ZNF534 (select the gene name)
Genetic variants : HAPMAP147658
Genomic Variants (DGV)ZNF534 [DGVbeta]
DECIPHER (Syndromes)19:52934667-52942699  ENSG00000198633
CONAN: Copy Number AnalysisZNF534 
Mutations
ICGC Data PortalZNF534 
TCGA Data PortalZNF534 
Broad Tumor PortalZNF534
OASIS PortalZNF534 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF534  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF534
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF534
DgiDB (Drug Gene Interaction Database)ZNF534
DoCM (Curated mutations)ZNF534 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF534 (select a term)
intoGenZNF534
Cancer3DZNF534(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZNF534
Genetic Testing Registry ZNF534
NextProtQ76KX8 [Medical]
TSGene147658
GENETestsZNF534
Huge Navigator ZNF534 [HugePedia]
snp3D : Map Gene to Disease147658
BioCentury BCIQZNF534
ClinGenZNF534
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD147658
Chemical/Pharm GKB GenePA134911920
Clinical trialZNF534
Miscellaneous
canSAR (ICR)ZNF534 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF534
EVEXZNF534
GoPubMedZNF534
iHOPZNF534
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:53:15 CET 2017

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