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ZNF536 (zinc finger protein 536)

Identity

Alias_symbol (synonym)KIAA0390
Other alias-
HGNC (Hugo) ZNF536
LocusID (NCBI) 9745
Atlas_Id 76218
Location 19q12  [Link to chromosome band 19q12]
Location_base_pair Starts at 30863328 and ends at 31048965 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
BLNK (10q24.1) / ZNF536 (19q12)FTO (16q12.2) / ZNF536 (19q12)MYO1B (2q32.3) / ZNF536 (19q12)
ZNF536 (19q12) / ALB (4q13.3)BLNK ZNF536MYO1B ZNF536

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF536   29025
Cards
Entrez_Gene (NCBI)ZNF536  9745  zinc finger protein 536
Aliases
GeneCards (Weizmann)ZNF536
Ensembl hg19 (Hinxton)ENSG00000198597 [Gene_View]  chr19:30863328-31048965 [Contig_View]  ZNF536 [Vega]
Ensembl hg38 (Hinxton)ENSG00000198597 [Gene_View]  chr19:30863328-31048965 [Contig_View]  ZNF536 [Vega]
ICGC DataPortalENSG00000198597
TCGA cBioPortalZNF536
AceView (NCBI)ZNF536
Genatlas (Paris)ZNF536
WikiGenes9745
SOURCE (Princeton)ZNF536
Genetics Home Reference (NIH)ZNF536
Genomic and cartography
GoldenPath hg19 (UCSC)ZNF536  -     chr19:30863328-31048965 +  19q12   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ZNF536  -     19q12   [Description]    (hg38-Dec_2013)
EnsemblZNF536 - 19q12 [CytoView hg19]  ZNF536 - 19q12 [CytoView hg38]
Mapping of homologs : NCBIZNF536 [Mapview hg19]  ZNF536 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB002388 AK091070 AK128073 BC132720 BC132722
RefSeq transcript (Entrez)NM_014717
RefSeq genomic (Entrez)NC_000019 NC_018930 NT_011109 NW_004929415
Consensus coding sequences : CCDS (NCBI)ZNF536
Cluster EST : UnigeneHs.378901 [ NCBI ]
CGAP (NCI)Hs.378901
Alternative Splicing GalleryENSG00000198597
Gene ExpressionZNF536 [ NCBI-GEO ]   ZNF536 [ EBI - ARRAY_EXPRESS ]   ZNF536 [ SEEK ]   ZNF536 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF536 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9745
GTEX Portal (Tissue expression)ZNF536
Protein : pattern, domain, 3D structure
UniProt/SwissProtO15090   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO15090  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO15090
Splice isoforms : SwissVarO15090
PhosPhoSitePlusO15090
Domaine pattern : Prosite (Expaxy)ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)zf-C2H2 (PF00096)   
Domain families : Pfam (NCBI)pfam00096   
Domain families : Smart (EMBL)ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF536
DMDM Disease mutations9745
Blocks (Seattle)ZNF536
SuperfamilyO15090
Human Protein AtlasENSG00000198597
Peptide AtlasO15090
HPRD15825
IPIIPI00006046   
Protein Interaction databases
DIP (DOE-UCLA)O15090
IntAct (EBI)O15090
FunCoupENSG00000198597
BioGRIDZNF536
STRING (EMBL)ZNF536
ZODIACZNF536
Ontologies - Pathways
QuickGOO15090
Ontology : AmiGOnegative regulation of transcription from RNA polymerase II promoter  RNA polymerase II core promoter proximal region sequence-specific DNA binding  RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription  nucleus  transcription, DNA-templated  retinoic acid-responsive element binding  negative regulation of neuron differentiation  metal ion binding  negative regulation of retinoic acid receptor signaling pathway  
Ontology : EGO-EBInegative regulation of transcription from RNA polymerase II promoter  RNA polymerase II core promoter proximal region sequence-specific DNA binding  RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription  nucleus  transcription, DNA-templated  retinoic acid-responsive element binding  negative regulation of neuron differentiation  metal ion binding  negative regulation of retinoic acid receptor signaling pathway  
NDEx NetworkZNF536
Atlas of Cancer Signalling NetworkZNF536
Wikipedia pathwaysZNF536
Orthology - Evolution
OrthoDB9745
GeneTree (enSembl)ENSG00000198597
Phylogenetic Trees/Animal Genes : TreeFamZNF536
HOVERGENO15090
HOGENOMO15090
Homologs : HomoloGeneZNF536
Homology/Alignments : Family Browser (UCSC)ZNF536
Gene fusions - Rearrangements
Fusion: TCGABLNK ZNF536
Fusion: TCGAMYO1B ZNF536
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF536 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF536
dbVarZNF536
ClinVarZNF536
1000_GenomesZNF536 
Exome Variant ServerZNF536
ExAC (Exome Aggregation Consortium)ZNF536 (select the gene name)
Genetic variants : HAPMAP9745
Genomic Variants (DGV)ZNF536 [DGVbeta]
DECIPHER (Syndromes)19:30863328-31048965  ENSG00000198597
CONAN: Copy Number AnalysisZNF536 
Mutations
ICGC Data PortalZNF536 
TCGA Data PortalZNF536 
Broad Tumor PortalZNF536
OASIS PortalZNF536 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF536  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF536
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF536
DgiDB (Drug Gene Interaction Database)ZNF536
DoCM (Curated mutations)ZNF536 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF536 (select a term)
intoGenZNF536
Cancer3DZNF536(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZNF536
Genetic Testing Registry ZNF536
NextProtO15090 [Medical]
TSGene9745
GENETestsZNF536
Huge Navigator ZNF536 [HugePedia]
snp3D : Map Gene to Disease9745
BioCentury BCIQZNF536
ClinGenZNF536
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9745
Chemical/Pharm GKB GenePA134920047
Clinical trialZNF536
Miscellaneous
canSAR (ICR)ZNF536 (select the gene name)
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF536
EVEXZNF536
GoPubMedZNF536
iHOPZNF536
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:53:16 CET 2017

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