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ZNF541 (zinc finger protein 541)

Identity

Alias_symbol (synonym)DKFZp434I1930
Other alias-
HGNC (Hugo) ZNF541
LocusID (NCBI) 84215
Atlas_Id 76220
Location 19q13.33  [Link to chromosome band 19q13]
Location_base_pair Starts at 48023942 and ends at 48059113 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
RBM17 (10p15.1) / ZNF541 (19q13.33)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF541   25294
Cards
Entrez_Gene (NCBI)ZNF541  84215  zinc finger protein 541
Aliases
GeneCards (Weizmann)ZNF541
Ensembl hg19 (Hinxton)ENSG00000118156 [Gene_View]  chr19:48023942-48059113 [Contig_View]  ZNF541 [Vega]
Ensembl hg38 (Hinxton)ENSG00000118156 [Gene_View]  chr19:48023942-48059113 [Contig_View]  ZNF541 [Vega]
ICGC DataPortalENSG00000118156
TCGA cBioPortalZNF541
AceView (NCBI)ZNF541
Genatlas (Paris)ZNF541
WikiGenes84215
SOURCE (Princeton)ZNF541
Genetics Home Reference (NIH)ZNF541
Genomic and cartography
GoldenPath hg19 (UCSC)ZNF541  -     chr19:48023942-48059113 -  19q13.33   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ZNF541  -     19q13.33   [Description]    (hg38-Dec_2013)
EnsemblZNF541 - 19q13.33 [CytoView hg19]  ZNF541 - 19q13.33 [CytoView hg38]
Mapping of homologs : NCBIZNF541 [Mapview hg19]  ZNF541 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK314169 AL136846 AL833862 BC101050 BC101051
RefSeq transcript (Entrez)NM_001101419 NM_001277075 NM_032255
RefSeq genomic (Entrez)NC_000019 NC_018930 NT_011109 NW_004929415
Consensus coding sequences : CCDS (NCBI)ZNF541
Cluster EST : UnigeneHs.14161 [ NCBI ]
CGAP (NCI)Hs.14161
Alternative Splicing GalleryENSG00000118156
Gene ExpressionZNF541 [ NCBI-GEO ]   ZNF541 [ EBI - ARRAY_EXPRESS ]   ZNF541 [ SEEK ]   ZNF541 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF541 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84215
GTEX Portal (Tissue expression)ZNF541
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H0D2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H0D2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H0D2
Splice isoforms : SwissVarQ9H0D2
PhosPhoSitePlusQ9H0D2
Domaine pattern : Prosite (Expaxy)ELM2 (PS51156)    SANT (PS51293)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)ELM2_dom    Homeodomain-like    SANT/Myb    SANT_dom    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)ELM2 (PF01448)    zf-C2H2 (PF00096)   
Domain families : Pfam (NCBI)pfam01448    pfam00096   
Domain families : Smart (EMBL)SANT (SM00717)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF541
DMDM Disease mutations84215
Blocks (Seattle)ZNF541
SuperfamilyQ9H0D2
Human Protein AtlasENSG00000118156
Peptide AtlasQ9H0D2
HPRD10337
IPIIPI00031040   IPI00168550   IPI00789566   
Protein Interaction databases
DIP (DOE-UCLA)Q9H0D2
IntAct (EBI)Q9H0D2
FunCoupENSG00000118156
BioGRIDZNF541
STRING (EMBL)ZNF541
ZODIACZNF541
Ontologies - Pathways
QuickGOQ9H0D2
Ontology : AmiGOhistone deacetylase complex  DNA binding  chromatin binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  multicellular organismal development  spermatogenesis  cell differentiation  metal ion binding  
Ontology : EGO-EBIhistone deacetylase complex  DNA binding  chromatin binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  multicellular organismal development  spermatogenesis  cell differentiation  metal ion binding  
NDEx NetworkZNF541
Atlas of Cancer Signalling NetworkZNF541
Wikipedia pathwaysZNF541
Orthology - Evolution
OrthoDB84215
GeneTree (enSembl)ENSG00000118156
Phylogenetic Trees/Animal Genes : TreeFamZNF541
HOVERGENQ9H0D2
HOGENOMQ9H0D2
Homologs : HomoloGeneZNF541
Homology/Alignments : Family Browser (UCSC)ZNF541
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF541 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF541
dbVarZNF541
ClinVarZNF541
1000_GenomesZNF541 
Exome Variant ServerZNF541
ExAC (Exome Aggregation Consortium)ZNF541 (select the gene name)
Genetic variants : HAPMAP84215
Genomic Variants (DGV)ZNF541 [DGVbeta]
DECIPHER (Syndromes)19:48023942-48059113  ENSG00000118156
CONAN: Copy Number AnalysisZNF541 
Mutations
ICGC Data PortalZNF541 
TCGA Data PortalZNF541 
Broad Tumor PortalZNF541
OASIS PortalZNF541 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF541  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF541
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF541
DgiDB (Drug Gene Interaction Database)ZNF541
DoCM (Curated mutations)ZNF541 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF541 (select a term)
intoGenZNF541
Cancer3DZNF541(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZNF541
Genetic Testing Registry ZNF541
NextProtQ9H0D2 [Medical]
TSGene84215
GENETestsZNF541
Huge Navigator ZNF541 [HugePedia]
snp3D : Map Gene to Disease84215
BioCentury BCIQZNF541
ClinGenZNF541
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84215
Chemical/Pharm GKB GenePA134941115
Clinical trialZNF541
Miscellaneous
canSAR (ICR)ZNF541 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF541
EVEXZNF541
GoPubMedZNF541
iHOPZNF541
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:53:16 CET 2017

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