Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

ZNF542P (zinc finger protein 542, pseudogene)

Identity

Alias_namesZNF542
zinc finger protein 542
Alias_symbol (synonym)DKFZp686B2197
Other alias
HGNC (Hugo) ZNF542P
LocusID (NCBI) 147947
Atlas_Id 76221
Location 19q13.43  [Link to chromosome band 19q13]
Location_base_pair Starts at 56879690 and ends at 56890851 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF542P   25393
Cards
Entrez_Gene (NCBI)ZNF542P  147947  zinc finger protein 542, pseudogene
AliasesZNF542
GeneCards (Weizmann)ZNF542P
Ensembl hg19 (Hinxton)ENSG00000240225 [Gene_View]  chr19:56879690-56890851 [Contig_View]  ZNF542P [Vega]
Ensembl hg38 (Hinxton)ENSG00000240225 [Gene_View]  chr19:56879690-56890851 [Contig_View]  ZNF542P [Vega]
ICGC DataPortalENSG00000240225
TCGA cBioPortalZNF542P
AceView (NCBI)ZNF542P
Genatlas (Paris)ZNF542P
WikiGenes147947
SOURCE (Princeton)ZNF542P
Genetics Home Reference (NIH)ZNF542P
Genomic and cartography
GoldenPath hg19 (UCSC)ZNF542P  -     chr19:56879690-56890851 +  19q13.43   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ZNF542P  -     19q13.43   [Description]    (hg38-Dec_2013)
EnsemblZNF542P - 19q13.43 [CytoView hg19]  ZNF542P - 19q13.43 [CytoView hg38]
Mapping of homologs : NCBIZNF542P [Mapview hg19]  ZNF542P [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK097128 AK297170 AL833621 BC064603 BC089419
RefSeq transcript (Entrez)NM_194319
RefSeq genomic (Entrez)NC_000019 NC_018930 NT_011109 NW_004929415
Consensus coding sequences : CCDS (NCBI)ZNF542P
Cluster EST : UnigeneHs.467326 [ NCBI ]
CGAP (NCI)Hs.467326
Alternative Splicing GalleryENSG00000240225
Gene ExpressionZNF542P [ NCBI-GEO ]   ZNF542P [ EBI - ARRAY_EXPRESS ]   ZNF542P [ SEEK ]   ZNF542P [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF542P [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)147947
GTEX Portal (Tissue expression)ZNF542P
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5EBM4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5EBM4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5EBM4
Splice isoforms : SwissVarQ5EBM4
PhosPhoSitePlusQ5EBM4
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Krueppel-associated_box    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF542P
DMDM Disease mutations147947
Blocks (Seattle)ZNF542P
SuperfamilyQ5EBM4
Human Protein AtlasENSG00000240225
Peptide AtlasQ5EBM4
HPRD15828
IPIIPI00375618   IPI00974122   IPI00976458   
Protein Interaction databases
DIP (DOE-UCLA)Q5EBM4
IntAct (EBI)Q5EBM4
FunCoupENSG00000240225
BioGRIDZNF542P
STRING (EMBL)ZNF542P
ZODIACZNF542P
Ontologies - Pathways
QuickGOQ5EBM4
Ontology : AmiGODNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF542P
Atlas of Cancer Signalling NetworkZNF542P
Wikipedia pathwaysZNF542P
Orthology - Evolution
OrthoDB147947
GeneTree (enSembl)ENSG00000240225
Phylogenetic Trees/Animal Genes : TreeFamZNF542P
HOVERGENQ5EBM4
HOGENOMQ5EBM4
Homologs : HomoloGeneZNF542P
Homology/Alignments : Family Browser (UCSC)ZNF542P
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF542P [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF542P
dbVarZNF542P
ClinVarZNF542P
1000_GenomesZNF542P 
Exome Variant ServerZNF542P
ExAC (Exome Aggregation Consortium)ZNF542P (select the gene name)
Genetic variants : HAPMAP147947
Genomic Variants (DGV)ZNF542P [DGVbeta]
DECIPHER (Syndromes)19:56879690-56890851  ENSG00000240225
CONAN: Copy Number AnalysisZNF542P 
Mutations
ICGC Data PortalZNF542P 
TCGA Data PortalZNF542P 
Broad Tumor PortalZNF542P
OASIS PortalZNF542P [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDZNF542P
BioMutasearch ZNF542P
DgiDB (Drug Gene Interaction Database)ZNF542P
DoCM (Curated mutations)ZNF542P (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF542P (select a term)
intoGenZNF542P
Cancer3DZNF542P(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZNF542P
Genetic Testing Registry ZNF542P
NextProtQ5EBM4 [Medical]
TSGene147947
GENETestsZNF542P
Huge Navigator ZNF542P [HugePedia]
snp3D : Map Gene to Disease147947
BioCentury BCIQZNF542P
ClinGenZNF542P
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD147947
Chemical/Pharm GKB GenePA134862889
Clinical trialZNF542P
Miscellaneous
canSAR (ICR)ZNF542P (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF542P
EVEXZNF542P
GoPubMedZNF542P
iHOPZNF542P
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:53:16 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.