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ZNF543 (zinc finger protein 543)

Identity

Alias_symbol (synonym)DKFZp434H055
Other alias-
HGNC (Hugo) ZNF543
LocusID (NCBI) 125919
Atlas_Id 76222
Location 19q13.43  [Link to chromosome band 19q13]
Location_base_pair Starts at 57831865 and ends at 57842144 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
TOX (8q12.1) / ZNF543 (19q13.43)ZNF543 (19q13.43) / ZNF8 (19q13.43)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF543   25281
Cards
Entrez_Gene (NCBI)ZNF543  125919  zinc finger protein 543
Aliases
GeneCards (Weizmann)ZNF543
Ensembl hg19 (Hinxton)ENSG00000178229 [Gene_View]  chr19:57831865-57842144 [Contig_View]  ZNF543 [Vega]
Ensembl hg38 (Hinxton)ENSG00000178229 [Gene_View]  chr19:57831865-57842144 [Contig_View]  ZNF543 [Vega]
ICGC DataPortalENSG00000178229
TCGA cBioPortalZNF543
AceView (NCBI)ZNF543
Genatlas (Paris)ZNF543
WikiGenes125919
SOURCE (Princeton)ZNF543
Genetics Home Reference (NIH)ZNF543
Genomic and cartography
GoldenPath hg19 (UCSC)ZNF543  -     chr19:57831865-57842144 +  19q13.43   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ZNF543  -     19q13.43   [Description]    (hg38-Dec_2013)
EnsemblZNF543 - 19q13.43 [CytoView hg19]  ZNF543 - 19q13.43 [CytoView hg38]
Mapping of homologs : NCBIZNF543 [Mapview hg19]  ZNF543 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF024696 AK131547 AL834534 BC101012 BC101013
RefSeq transcript (Entrez)NM_213598
RefSeq genomic (Entrez)NC_000019 NC_018930 NT_011109 NW_004929415
Consensus coding sequences : CCDS (NCBI)ZNF543
Cluster EST : UnigeneHs.202544 [ NCBI ]
CGAP (NCI)Hs.202544
Alternative Splicing GalleryENSG00000178229
Gene ExpressionZNF543 [ NCBI-GEO ]   ZNF543 [ EBI - ARRAY_EXPRESS ]   ZNF543 [ SEEK ]   ZNF543 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF543 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)125919
GTEX Portal (Tissue expression)ZNF543
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ08ER8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ08ER8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ08ER8
Splice isoforms : SwissVarQ08ER8
PhosPhoSitePlusQ08ER8
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Krueppel-associated_box    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)   
Domain families : Pfam (NCBI)pfam01352   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF543
DMDM Disease mutations125919
Blocks (Seattle)ZNF543
SuperfamilyQ08ER8
Human Protein AtlasENSG00000178229
Peptide AtlasQ08ER8
HPRD15829
IPIIPI00795692   IPI00816375   IPI00719028   
Protein Interaction databases
DIP (DOE-UCLA)Q08ER8
IntAct (EBI)Q08ER8
FunCoupENSG00000178229
BioGRIDZNF543
STRING (EMBL)ZNF543
ZODIACZNF543
Ontologies - Pathways
QuickGOQ08ER8
Ontology : AmiGODNA binding  protein binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  protein binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF543
Atlas of Cancer Signalling NetworkZNF543
Wikipedia pathwaysZNF543
Orthology - Evolution
OrthoDB125919
GeneTree (enSembl)ENSG00000178229
Phylogenetic Trees/Animal Genes : TreeFamZNF543
HOVERGENQ08ER8
HOGENOMQ08ER8
Homologs : HomoloGeneZNF543
Homology/Alignments : Family Browser (UCSC)ZNF543
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF543 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF543
dbVarZNF543
ClinVarZNF543
1000_GenomesZNF543 
Exome Variant ServerZNF543
ExAC (Exome Aggregation Consortium)ZNF543 (select the gene name)
Genetic variants : HAPMAP125919
Genomic Variants (DGV)ZNF543 [DGVbeta]
DECIPHER (Syndromes)19:57831865-57842144  ENSG00000178229
CONAN: Copy Number AnalysisZNF543 
Mutations
ICGC Data PortalZNF543 
TCGA Data PortalZNF543 
Broad Tumor PortalZNF543
OASIS PortalZNF543 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF543  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF543
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF543
DgiDB (Drug Gene Interaction Database)ZNF543
DoCM (Curated mutations)ZNF543 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF543 (select a term)
intoGenZNF543
Cancer3DZNF543(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZNF543
Genetic Testing Registry ZNF543
NextProtQ08ER8 [Medical]
TSGene125919
GENETestsZNF543
Huge Navigator ZNF543 [HugePedia]
snp3D : Map Gene to Disease125919
BioCentury BCIQZNF543
ClinGenZNF543
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD125919
Chemical/Pharm GKB GenePA134914064
Clinical trialZNF543
Miscellaneous
canSAR (ICR)ZNF543 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF543
EVEXZNF543
GoPubMedZNF543
iHOPZNF543
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:53:16 CET 2017

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