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ZNF544 (zinc finger protein 544)

Identity

Alias_symbol (synonym)AF020591
Other alias-
HGNC (Hugo) ZNF544
LocusID (NCBI) 27300
Atlas_Id 54809
Location 19q13.43  [Link to chromosome band 19q13]
Location_base_pair Starts at 58228681 and ends at 58263642 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ZNF544 (19q13.43) / AP2A1 (19q13.33)ZNF544 (19q13.43) / CCDC61 (19q13.32)ZNF544 (19q13.43) / SENP6 (6q14.1)
ZNF544 (19q13.43) / ZNF544 (19q13.43)ZNF573 (19q13.12) / ZNF544 (19q13.43)ZNF544 19q13.43 / AP2A1 19q13.33
ZNF544 19q13.43 / CCDC61 19q13.32ZNF544 19q13.43 / SENP6 6q14.1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF544   16759
Cards
Entrez_Gene (NCBI)ZNF544  27300  zinc finger protein 544
Aliases
GeneCards (Weizmann)ZNF544
Ensembl hg19 (Hinxton)ENSG00000198131 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000198131 [Gene_View]  chr19:58228681-58263642 [Contig_View]  ZNF544 [Vega]
ICGC DataPortalENSG00000198131
TCGA cBioPortalZNF544
AceView (NCBI)ZNF544
Genatlas (Paris)ZNF544
WikiGenes27300
SOURCE (Princeton)ZNF544
Genetics Home Reference (NIH)ZNF544
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF544  -     chr19:58228681-58263642 +  19q13.43   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF544  -     19q13.43   [Description]    (hg19-Feb_2009)
EnsemblZNF544 - 19q13.43 [CytoView hg19]  ZNF544 - 19q13.43 [CytoView hg38]
Mapping of homologs : NCBIZNF544 [Mapview hg19]  ZNF544 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF020591 AF024692 AK096997 AK226080 AK290297
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF544
Cluster EST : UnigeneHs.710049 [ NCBI ]
CGAP (NCI)Hs.710049
Alternative Splicing GalleryENSG00000198131
Gene ExpressionZNF544 [ NCBI-GEO ]   ZNF544 [ EBI - ARRAY_EXPRESS ]   ZNF544 [ SEEK ]   ZNF544 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF544 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)27300
GTEX Portal (Tissue expression)ZNF544
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6NX49   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6NX49  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6NX49
Splice isoforms : SwissVarQ6NX49
PhosPhoSitePlusQ6NX49
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)    zf-C2H2 (PF00096)   
Domain families : Pfam (NCBI)pfam01352    pfam00096   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF544
DMDM Disease mutations27300
Blocks (Seattle)ZNF544
SuperfamilyQ6NX49
Human Protein AtlasENSG00000198131
Peptide AtlasQ6NX49
HPRD15830
IPIIPI00004482   IPI00909900   IPI00217115   IPI01009110   
Protein Interaction databases
DIP (DOE-UCLA)Q6NX49
IntAct (EBI)Q6NX49
FunCoupENSG00000198131
BioGRIDZNF544
STRING (EMBL)ZNF544
ZODIACZNF544
Ontologies - Pathways
QuickGOQ6NX49
Ontology : AmiGODNA binding  transcription factor activity, sequence-specific DNA binding  protein binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  transcription factor activity, sequence-specific DNA binding  protein binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF544
Atlas of Cancer Signalling NetworkZNF544
Wikipedia pathwaysZNF544
Orthology - Evolution
OrthoDB27300
GeneTree (enSembl)ENSG00000198131
Phylogenetic Trees/Animal Genes : TreeFamZNF544
HOVERGENQ6NX49
HOGENOMQ6NX49
Homologs : HomoloGeneZNF544
Homology/Alignments : Family Browser (UCSC)ZNF544
Gene fusions - Rearrangements
Fusion : MitelmanZNF544/AP2A1 [19q13.43/19q13.33]  
Fusion : MitelmanZNF544/CCDC61 [19q13.43/19q13.32]  [t(19;19)(q13;q13)]  
Fusion : MitelmanZNF544/SENP6 [19q13.43/6q14.1]  [t(6;19)(q14;q13)]  
Fusion: TCGAZNF544 19q13.43 AP2A1 19q13.33 GBM
Fusion: TCGAZNF544 19q13.43 CCDC61 19q13.32 BLCA
Fusion: TCGAZNF544 19q13.43 SENP6 6q14.1 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF544 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF544
dbVarZNF544
ClinVarZNF544
1000_GenomesZNF544 
Exome Variant ServerZNF544
ExAC (Exome Aggregation Consortium)ZNF544 (select the gene name)
Genetic variants : HAPMAP27300
Genomic Variants (DGV)ZNF544 [DGVbeta]
DECIPHERZNF544 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF544 
Mutations
ICGC Data PortalZNF544 
TCGA Data PortalZNF544 
Broad Tumor PortalZNF544
OASIS PortalZNF544 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF544  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF544
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF544
DgiDB (Drug Gene Interaction Database)ZNF544
DoCM (Curated mutations)ZNF544 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF544 (select a term)
intoGenZNF544
Cancer3DZNF544(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZNF544
Genetic Testing Registry ZNF544
NextProtQ6NX49 [Medical]
TSGene27300
GENETestsZNF544
Huge Navigator ZNF544 [HugePedia]
snp3D : Map Gene to Disease27300
BioCentury BCIQZNF544
ClinGenZNF544
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD27300
Chemical/Pharm GKB GenePA134871299
Clinical trialZNF544
Miscellaneous
canSAR (ICR)ZNF544 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF544
EVEXZNF544
GoPubMedZNF544
iHOPZNF544
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:45:04 CEST 2017

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