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ZNF546 (zinc finger protein 546)

Identity

Alias_namesZNF49
Alias_symbol (synonym)MGC43537
Other alias
HGNC (Hugo) ZNF546
LocusID (NCBI) 339327
Atlas_Id 76223
Location 19q13.2  [Link to chromosome band 19q13]
Location_base_pair Starts at 39997036 and ends at 40021041 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
PTPRG (3p14.2) / ZNF546 (19q13.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF546   28671
Cards
Entrez_Gene (NCBI)ZNF546  339327  zinc finger protein 546
AliasesZNF49
GeneCards (Weizmann)ZNF546
Ensembl hg19 (Hinxton)ENSG00000187187 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000187187 [Gene_View]  chr19:39997036-40021041 [Contig_View]  ZNF546 [Vega]
ICGC DataPortalENSG00000187187
TCGA cBioPortalZNF546
AceView (NCBI)ZNF546
Genatlas (Paris)ZNF546
WikiGenes339327
SOURCE (Princeton)ZNF546
Genetics Home Reference (NIH)ZNF546
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF546  -     chr19:39997036-40021041 +  19q13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF546  -     19q13.2   [Description]    (hg19-Feb_2009)
EnsemblZNF546 - 19q13.2 [CytoView hg19]  ZNF546 - 19q13.2 [CytoView hg38]
Mapping of homologs : NCBIZNF546 [Mapview hg19]  ZNF546 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF087985 AK122968 AK172809 AK292528 BC045649
RefSeq transcript (Entrez)NM_001297763 NM_178544
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF546
Cluster EST : UnigeneHs.666807 [ NCBI ]
CGAP (NCI)Hs.666807
Alternative Splicing GalleryENSG00000187187
Gene ExpressionZNF546 [ NCBI-GEO ]   ZNF546 [ EBI - ARRAY_EXPRESS ]   ZNF546 [ SEEK ]   ZNF546 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF546 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)339327
GTEX Portal (Tissue expression)ZNF546
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86UE3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86UE3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86UE3
Splice isoforms : SwissVarQ86UE3
PhosPhoSitePlusQ86UE3
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)    zf-C2H2 (PF00096)    zf-C2H2_6 (PF13912)   
Domain families : Pfam (NCBI)pfam01352    pfam00096    pfam13912   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF546
DMDM Disease mutations339327
Blocks (Seattle)ZNF546
SuperfamilyQ86UE3
Human Protein AtlasENSG00000187187
Peptide AtlasQ86UE3
HPRD11726
IPIIPI00328713   IPI00441919   IPI00873335   
Protein Interaction databases
DIP (DOE-UCLA)Q86UE3
IntAct (EBI)Q86UE3
FunCoupENSG00000187187
BioGRIDZNF546
STRING (EMBL)ZNF546
ZODIACZNF546
Ontologies - Pathways
QuickGOQ86UE3
Ontology : AmiGODNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF546
Atlas of Cancer Signalling NetworkZNF546
Wikipedia pathwaysZNF546
Orthology - Evolution
OrthoDB339327
GeneTree (enSembl)ENSG00000187187
Phylogenetic Trees/Animal Genes : TreeFamZNF546
HOVERGENQ86UE3
HOGENOMQ86UE3
Homologs : HomoloGeneZNF546
Homology/Alignments : Family Browser (UCSC)ZNF546
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF546 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF546
dbVarZNF546
ClinVarZNF546
1000_GenomesZNF546 
Exome Variant ServerZNF546
ExAC (Exome Aggregation Consortium)ZNF546 (select the gene name)
Genetic variants : HAPMAP339327
Genomic Variants (DGV)ZNF546 [DGVbeta]
DECIPHERZNF546 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF546 
Mutations
ICGC Data PortalZNF546 
TCGA Data PortalZNF546 
Broad Tumor PortalZNF546
OASIS PortalZNF546 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF546  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF546
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF546
DgiDB (Drug Gene Interaction Database)ZNF546
DoCM (Curated mutations)ZNF546 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF546 (select a term)
intoGenZNF546
Cancer3DZNF546(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZNF546
Genetic Testing Registry ZNF546
NextProtQ86UE3 [Medical]
TSGene339327
GENETestsZNF546
Huge Navigator ZNF546 [HugePedia]
snp3D : Map Gene to Disease339327
BioCentury BCIQZNF546
ClinGenZNF546
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD339327
Chemical/Pharm GKB GenePA134881362
Clinical trialZNF546
Miscellaneous
canSAR (ICR)ZNF546 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF546
EVEXZNF546
GoPubMedZNF546
iHOPZNF546
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:03:14 CEST 2017

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