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ZNF547 (zinc finger protein 547)

Identity

Alias_symbol (synonym)FLJ31100
Other alias-
HGNC (Hugo) ZNF547
LocusID (NCBI) 284306
Atlas_Id 76224
Location 19q13.43  [Link to chromosome band 19q13]
Location_base_pair Starts at 57363435 and ends at 57379557 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF547   26432
Cards
Entrez_Gene (NCBI)ZNF547  284306  zinc finger protein 547
Aliases
GeneCards (Weizmann)ZNF547
Ensembl hg19 (Hinxton)ENSG00000152433 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000152433 [Gene_View]  chr19:57363435-57379557 [Contig_View]  ZNF547 [Vega]
ICGC DataPortalENSG00000152433
TCGA cBioPortalZNF547
AceView (NCBI)ZNF547
Genatlas (Paris)ZNF547
WikiGenes284306
SOURCE (Princeton)ZNF547
Genetics Home Reference (NIH)ZNF547
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF547  -     chr19:57363435-57379557 +  19q13.43   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF547  -     19q13.43   [Description]    (hg19-Feb_2009)
EnsemblZNF547 - 19q13.43 [CytoView hg19]  ZNF547 - 19q13.43 [CytoView hg38]
Mapping of homologs : NCBIZNF547 [Mapview hg19]  ZNF547 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK055662 AK291464 AL832545 BC042681 EU446628
RefSeq transcript (Entrez)NM_173631
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF547
Cluster EST : UnigeneHs.446620 [ NCBI ]
CGAP (NCI)Hs.446620
Alternative Splicing GalleryENSG00000152433
Gene ExpressionZNF547 [ NCBI-GEO ]   ZNF547 [ EBI - ARRAY_EXPRESS ]   ZNF547 [ SEEK ]   ZNF547 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF547 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)284306
GTEX Portal (Tissue expression)ZNF547
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IVP9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IVP9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IVP9
Splice isoforms : SwissVarQ8IVP9
PhosPhoSitePlusQ8IVP9
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)   
Domain families : Pfam (NCBI)pfam01352   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF547
DMDM Disease mutations284306
Blocks (Seattle)ZNF547
SuperfamilyQ8IVP9
Human Protein AtlasENSG00000152433
Peptide AtlasQ8IVP9
HPRD15831
IPIIPI00217083   IPI00655749   IPI00874135   
Protein Interaction databases
DIP (DOE-UCLA)Q8IVP9
IntAct (EBI)Q8IVP9
FunCoupENSG00000152433
BioGRIDZNF547
STRING (EMBL)ZNF547
ZODIACZNF547
Ontologies - Pathways
QuickGOQ8IVP9
Ontology : AmiGODNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF547
Atlas of Cancer Signalling NetworkZNF547
Wikipedia pathwaysZNF547
Orthology - Evolution
OrthoDB284306
GeneTree (enSembl)ENSG00000152433
Phylogenetic Trees/Animal Genes : TreeFamZNF547
HOVERGENQ8IVP9
HOGENOMQ8IVP9
Homologs : HomoloGeneZNF547
Homology/Alignments : Family Browser (UCSC)ZNF547
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF547 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF547
dbVarZNF547
ClinVarZNF547
1000_GenomesZNF547 
Exome Variant ServerZNF547
ExAC (Exome Aggregation Consortium)ZNF547 (select the gene name)
Genetic variants : HAPMAP284306
Genomic Variants (DGV)ZNF547 [DGVbeta]
DECIPHERZNF547 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF547 
Mutations
ICGC Data PortalZNF547 
TCGA Data PortalZNF547 
Broad Tumor PortalZNF547
OASIS PortalZNF547 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF547  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF547
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF547
DgiDB (Drug Gene Interaction Database)ZNF547
DoCM (Curated mutations)ZNF547 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF547 (select a term)
intoGenZNF547
Cancer3DZNF547(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZNF547
Genetic Testing Registry ZNF547
NextProtQ8IVP9 [Medical]
TSGene284306
GENETestsZNF547
Target ValidationZNF547
Huge Navigator ZNF547 [HugePedia]
snp3D : Map Gene to Disease284306
BioCentury BCIQZNF547
ClinGenZNF547
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD284306
Chemical/Pharm GKB GenePA134931565
Clinical trialZNF547
Miscellaneous
canSAR (ICR)ZNF547 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF547
EVEXZNF547
GoPubMedZNF547
iHOPZNF547
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 31 15:50:41 CEST 2017

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