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ZNF549 (zinc finger protein 549)

Identity

Alias_symbol (synonym)FLJ34917
Other alias-
HGNC (Hugo) ZNF549
LocusID (NCBI) 256051
Atlas_Id 76226
Location 19q13.43  [Link to chromosome band 19q13]
Location_base_pair Starts at 57527325 and ends at 57540876 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ZNF549 (19q13.43) / CTU1 (19q13.41)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF549   26632
Cards
Entrez_Gene (NCBI)ZNF549  256051  zinc finger protein 549
Aliases
GeneCards (Weizmann)ZNF549
Ensembl hg19 (Hinxton)ENSG00000121406 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000121406 [Gene_View]  chr19:57527325-57540876 [Contig_View]  ZNF549 [Vega]
ICGC DataPortalENSG00000121406
TCGA cBioPortalZNF549
AceView (NCBI)ZNF549
Genatlas (Paris)ZNF549
WikiGenes256051
SOURCE (Princeton)ZNF549
Genetics Home Reference (NIH)ZNF549
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF549  -     chr19:57527325-57540876 +  19q13.43   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF549  -     19q13.43   [Description]    (hg19-Feb_2009)
EnsemblZNF549 - 19q13.43 [CytoView hg19]  ZNF549 - 19q13.43 [CytoView hg38]
Mapping of homologs : NCBIZNF549 [Mapview hg19]  ZNF549 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK092236 AK094139 AK122749 AK122766 AL833090
RefSeq transcript (Entrez)NM_001199295 NM_153263
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF549
Cluster EST : UnigeneHs.744289 [ NCBI ]
CGAP (NCI)Hs.744289
Alternative Splicing GalleryENSG00000121406
Gene ExpressionZNF549 [ NCBI-GEO ]   ZNF549 [ EBI - ARRAY_EXPRESS ]   ZNF549 [ SEEK ]   ZNF549 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF549 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)256051
GTEX Portal (Tissue expression)ZNF549
Human Protein AtlasENSG00000121406-ZNF549 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6P9A3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6P9A3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6P9A3
Splice isoforms : SwissVarQ6P9A3
PhosPhoSitePlusQ6P9A3
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)    zf-C2H2 (PF00096)    zf-C2H2_6 (PF13912)   
Domain families : Pfam (NCBI)pfam01352    pfam00096    pfam13912   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF549
DMDM Disease mutations256051
Blocks (Seattle)ZNF549
SuperfamilyQ6P9A3
Human Protein Atlas [tissue]ENSG00000121406-ZNF549 [tissue]
Peptide AtlasQ6P9A3
HPRD15833
IPIIPI00176222   IPI00743870   
Protein Interaction databases
DIP (DOE-UCLA)Q6P9A3
IntAct (EBI)Q6P9A3
FunCoupENSG00000121406
BioGRIDZNF549
STRING (EMBL)ZNF549
ZODIACZNF549
Ontologies - Pathways
QuickGOQ6P9A3
Ontology : AmiGODNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF549
Atlas of Cancer Signalling NetworkZNF549
Wikipedia pathwaysZNF549
Orthology - Evolution
OrthoDB256051
GeneTree (enSembl)ENSG00000121406
Phylogenetic Trees/Animal Genes : TreeFamZNF549
HOVERGENQ6P9A3
HOGENOMQ6P9A3
Homologs : HomoloGeneZNF549
Homology/Alignments : Family Browser (UCSC)ZNF549
Gene fusions - Rearrangements
Tumor Fusion PortalZNF549
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF549 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF549
dbVarZNF549
ClinVarZNF549
1000_GenomesZNF549 
Exome Variant ServerZNF549
ExAC (Exome Aggregation Consortium)ENSG00000121406
GNOMAD BrowserENSG00000121406
Genetic variants : HAPMAP256051
Genomic Variants (DGV)ZNF549 [DGVbeta]
DECIPHERZNF549 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF549 
Mutations
ICGC Data PortalZNF549 
TCGA Data PortalZNF549 
Broad Tumor PortalZNF549
OASIS PortalZNF549 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF549  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF549
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF549
DgiDB (Drug Gene Interaction Database)ZNF549
DoCM (Curated mutations)ZNF549 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF549 (select a term)
intoGenZNF549
Cancer3DZNF549(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETZNF549
MedgenZNF549
Genetic Testing Registry ZNF549
NextProtQ6P9A3 [Medical]
TSGene256051
GENETestsZNF549
Target ValidationZNF549
Huge Navigator ZNF549 [HugePedia]
snp3D : Map Gene to Disease256051
BioCentury BCIQZNF549
ClinGenZNF549
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD256051
Chemical/Pharm GKB GenePA134905435
Clinical trialZNF549
Miscellaneous
canSAR (ICR)ZNF549 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF549
EVEXZNF549
GoPubMedZNF549
iHOPZNF549
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:40:43 CET 2017

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