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ZNF550 (zinc finger protein 550)

Identity

Alias_symbol (synonym)MGC41917
Other alias-
HGNC (Hugo) ZNF550
LocusID (NCBI) 162972
Atlas_Id 76227
Location 19q13.43  [Link to chromosome band 19q13]
Location_base_pair Starts at 57541836 and ends at 57559863 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
VASH1 (14q24.3) / ZNF550 (19q13.43)ZNF550 (19q13.43) / CXCL17 (19q13.2)ZNF550 (19q13.43) / ISG20L2 (1q23.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF550   28643
Cards
Entrez_Gene (NCBI)ZNF550  162972  zinc finger protein 550
Aliases
GeneCards (Weizmann)ZNF550
Ensembl hg19 (Hinxton)ENSG00000251369 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000251369 [Gene_View]  chr19:57541836-57559863 [Contig_View]  ZNF550 [Vega]
ICGC DataPortalENSG00000251369
TCGA cBioPortalZNF550
AceView (NCBI)ZNF550
Genatlas (Paris)ZNF550
WikiGenes162972
SOURCE (Princeton)ZNF550
Genetics Home Reference (NIH)ZNF550
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF550  -     chr19:57541836-57559863 -  19q13.43   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF550  -     19q13.43   [Description]    (hg19-Feb_2009)
EnsemblZNF550 - 19q13.43 [CytoView hg19]  ZNF550 - 19q13.43 [CytoView hg38]
Mapping of homologs : NCBIZNF550 [Mapview hg19]  ZNF550 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI114826 AK122867 AK312802 AL833214 BC034810
RefSeq transcript (Entrez)NM_001039654 NM_001277090 NM_001277091 NM_001277092 NM_001277093 NM_153231
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF550
Cluster EST : UnigeneHs.180257 [ NCBI ]
CGAP (NCI)Hs.180257
Alternative Splicing GalleryENSG00000251369
Gene ExpressionZNF550 [ NCBI-GEO ]   ZNF550 [ EBI - ARRAY_EXPRESS ]   ZNF550 [ SEEK ]   ZNF550 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF550 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)162972
GTEX Portal (Tissue expression)ZNF550
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7Z398   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ7Z398  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ7Z398
Splice isoforms : SwissVarQ7Z398
PhosPhoSitePlusQ7Z398
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)    zf-C2H2 (PF00096)   
Domain families : Pfam (NCBI)pfam01352    pfam00096   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF550
DMDM Disease mutations162972
Blocks (Seattle)ZNF550
SuperfamilyQ7Z398
Human Protein AtlasENSG00000251369
Peptide AtlasQ7Z398
HPRD15834
IPIIPI00747149   IPI00186154   IPI01010472   
Protein Interaction databases
DIP (DOE-UCLA)Q7Z398
IntAct (EBI)Q7Z398
FunCoupENSG00000251369
BioGRIDZNF550
STRING (EMBL)ZNF550
ZODIACZNF550
Ontologies - Pathways
QuickGOQ7Z398
Ontology : AmiGODNA binding  protein binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  protein binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF550
Atlas of Cancer Signalling NetworkZNF550
Wikipedia pathwaysZNF550
Orthology - Evolution
OrthoDB162972
GeneTree (enSembl)ENSG00000251369
Phylogenetic Trees/Animal Genes : TreeFamZNF550
HOVERGENQ7Z398
HOGENOMQ7Z398
Homologs : HomoloGeneZNF550
Homology/Alignments : Family Browser (UCSC)ZNF550
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF550 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF550
dbVarZNF550
ClinVarZNF550
1000_GenomesZNF550 
Exome Variant ServerZNF550
ExAC (Exome Aggregation Consortium)ZNF550 (select the gene name)
Genetic variants : HAPMAP162972
Genomic Variants (DGV)ZNF550 [DGVbeta]
DECIPHERZNF550 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF550 
Mutations
ICGC Data PortalZNF550 
TCGA Data PortalZNF550 
Broad Tumor PortalZNF550
OASIS PortalZNF550 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF550  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF550
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF550
DgiDB (Drug Gene Interaction Database)ZNF550
DoCM (Curated mutations)ZNF550 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF550 (select a term)
intoGenZNF550
Cancer3DZNF550(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZNF550
Genetic Testing Registry ZNF550
NextProtQ7Z398 [Medical]
TSGene162972
GENETestsZNF550
Target ValidationZNF550
Huge Navigator ZNF550 [HugePedia]
snp3D : Map Gene to Disease162972
BioCentury BCIQZNF550
ClinGenZNF550
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD162972
Chemical/Pharm GKB GenePA134937679
Clinical trialZNF550
Miscellaneous
canSAR (ICR)ZNF550 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF550
EVEXZNF550
GoPubMedZNF550
iHOPZNF550
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:50:42 CEST 2017

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