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ZNF551 (zinc finger protein 551)

Identity

Alias_symbol (synonym)DKFZp686H1038
Other alias-
HGNC (Hugo) ZNF551
LocusID (NCBI) 90233
Atlas_Id 76228
Location 19q13.43  [Link to chromosome band 19q13]
Location_base_pair Starts at 58193337 and ends at 58201169 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
ZNF551 (19q13.43) / ZNF551 (19q13.43)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF551   25108
Cards
Entrez_Gene (NCBI)ZNF551  90233  zinc finger protein 551
Aliases
GeneCards (Weizmann)ZNF551
Ensembl hg19 (Hinxton)ENSG00000204519 [Gene_View]  chr19:58193337-58201169 [Contig_View]  ZNF551 [Vega]
Ensembl hg38 (Hinxton)ENSG00000204519 [Gene_View]  chr19:58193337-58201169 [Contig_View]  ZNF551 [Vega]
ICGC DataPortalENSG00000204519
TCGA cBioPortalZNF551
AceView (NCBI)ZNF551
Genatlas (Paris)ZNF551
WikiGenes90233
SOURCE (Princeton)ZNF551
Genetics Home Reference (NIH)ZNF551
Genomic and cartography
GoldenPath hg19 (UCSC)ZNF551  -     chr19:58193337-58201169 +  19q13.43   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ZNF551  -     19q13.43   [Description]    (hg38-Dec_2013)
EnsemblZNF551 - 19q13.43 [CytoView hg19]  ZNF551 - 19q13.43 [CytoView hg38]
Mapping of homologs : NCBIZNF551 [Mapview hg19]  ZNF551 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK091273 AK300465 AK307670 BC005868 BX538151
RefSeq transcript (Entrez)NM_001270938 NM_138347
RefSeq genomic (Entrez)NC_000019 NC_018930 NT_011109 NW_004929415
Consensus coding sequences : CCDS (NCBI)ZNF551
Cluster EST : UnigeneHs.109540 [ NCBI ]
CGAP (NCI)Hs.109540
Alternative Splicing GalleryENSG00000204519
Gene ExpressionZNF551 [ NCBI-GEO ]   ZNF551 [ EBI - ARRAY_EXPRESS ]   ZNF551 [ SEEK ]   ZNF551 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF551 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)90233
GTEX Portal (Tissue expression)ZNF551
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7Z340   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ7Z340  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ7Z340
Splice isoforms : SwissVarQ7Z340
PhosPhoSitePlusQ7Z340
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Krueppel-associated_box    ZNF551    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)   
Domain families : Pfam (NCBI)pfam01352   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF551
DMDM Disease mutations90233
Blocks (Seattle)ZNF551
SuperfamilyQ7Z340
Human Protein AtlasENSG00000204519
Peptide AtlasQ7Z340
HPRD11727
IPIIPI00157058   IPI00383924   IPI00478279   IPI00719468   
Protein Interaction databases
DIP (DOE-UCLA)Q7Z340
IntAct (EBI)Q7Z340
FunCoupENSG00000204519
BioGRIDZNF551
STRING (EMBL)ZNF551
ZODIACZNF551
Ontologies - Pathways
QuickGOQ7Z340
Ontology : AmiGODNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF551
Atlas of Cancer Signalling NetworkZNF551
Wikipedia pathwaysZNF551
Orthology - Evolution
OrthoDB90233
GeneTree (enSembl)ENSG00000204519
Phylogenetic Trees/Animal Genes : TreeFamZNF551
HOVERGENQ7Z340
HOGENOMQ7Z340
Homologs : HomoloGeneZNF551
Homology/Alignments : Family Browser (UCSC)ZNF551
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF551 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF551
dbVarZNF551
ClinVarZNF551
1000_GenomesZNF551 
Exome Variant ServerZNF551
ExAC (Exome Aggregation Consortium)ZNF551 (select the gene name)
Genetic variants : HAPMAP90233
Genomic Variants (DGV)ZNF551 [DGVbeta]
DECIPHER (Syndromes)19:58193337-58201169  ENSG00000204519
CONAN: Copy Number AnalysisZNF551 
Mutations
ICGC Data PortalZNF551 
TCGA Data PortalZNF551 
Broad Tumor PortalZNF551
OASIS PortalZNF551 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF551  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF551
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF551
DgiDB (Drug Gene Interaction Database)ZNF551
DoCM (Curated mutations)ZNF551 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF551 (select a term)
intoGenZNF551
Cancer3DZNF551(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZNF551
Genetic Testing Registry ZNF551
NextProtQ7Z340 [Medical]
TSGene90233
GENETestsZNF551
Huge Navigator ZNF551 [HugePedia]
snp3D : Map Gene to Disease90233
BioCentury BCIQZNF551
ClinGenZNF551
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD90233
Chemical/Pharm GKB GenePA134993781
Clinical trialZNF551
Miscellaneous
canSAR (ICR)ZNF551 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF551
EVEXZNF551
GoPubMedZNF551
iHOPZNF551
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:53:18 CET 2017

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