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ZNF552 (zinc finger protein 552)

Identity

Alias_symbol (synonym)FLJ21603
Other alias-
HGNC (Hugo) ZNF552
LocusID (NCBI) 79818
Atlas_Id 76229
Location 19q13.43  [Link to chromosome band 19q13]
Location_base_pair Starts at 58318450 and ends at 58326281 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
ZNF552 (19q13.43) / UBL3 (13q12.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF552   26135
Cards
Entrez_Gene (NCBI)ZNF552  79818  zinc finger protein 552
Aliases
GeneCards (Weizmann)ZNF552
Ensembl hg19 (Hinxton)ENSG00000178935 [Gene_View]  chr19:58318450-58326281 [Contig_View]  ZNF552 [Vega]
Ensembl hg38 (Hinxton)ENSG00000178935 [Gene_View]  chr19:58318450-58326281 [Contig_View]  ZNF552 [Vega]
ICGC DataPortalENSG00000178935
TCGA cBioPortalZNF552
AceView (NCBI)ZNF552
Genatlas (Paris)ZNF552
WikiGenes79818
SOURCE (Princeton)ZNF552
Genetics Home Reference (NIH)ZNF552
Genomic and cartography
GoldenPath hg19 (UCSC)ZNF552  -     chr19:58318450-58326281 -  19q13.43   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ZNF552  -     19q13.43   [Description]    (hg38-Dec_2013)
EnsemblZNF552 - 19q13.43 [CytoView hg19]  ZNF552 - 19q13.43 [CytoView hg38]
Mapping of homologs : NCBIZNF552 [Mapview hg19]  ZNF552 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK025256 AK097041 AK225219 AK293445 BC017460
RefSeq transcript (Entrez)NM_024762
RefSeq genomic (Entrez)NC_000019 NC_018930 NT_011109 NW_004929415
Consensus coding sequences : CCDS (NCBI)ZNF552
Cluster EST : UnigeneHs.560727 [ NCBI ]
CGAP (NCI)Hs.560727
Alternative Splicing GalleryENSG00000178935
Gene ExpressionZNF552 [ NCBI-GEO ]   ZNF552 [ EBI - ARRAY_EXPRESS ]   ZNF552 [ SEEK ]   ZNF552 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF552 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79818
GTEX Portal (Tissue expression)ZNF552
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H707   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H707  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H707
Splice isoforms : SwissVarQ9H707
PhosPhoSitePlusQ9H707
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Krueppel-associated_box    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)   
Domain families : Pfam (NCBI)pfam01352   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF552
DMDM Disease mutations79818
Blocks (Seattle)ZNF552
SuperfamilyQ9H707
Human Protein AtlasENSG00000178935
Peptide AtlasQ9H707
HPRD15835
IPIIPI00015533   IPI00908460   
Protein Interaction databases
DIP (DOE-UCLA)Q9H707
IntAct (EBI)Q9H707
FunCoupENSG00000178935
BioGRIDZNF552
STRING (EMBL)ZNF552
ZODIACZNF552
Ontologies - Pathways
QuickGOQ9H707
Ontology : AmiGODNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF552
Atlas of Cancer Signalling NetworkZNF552
Wikipedia pathwaysZNF552
Orthology - Evolution
OrthoDB79818
GeneTree (enSembl)ENSG00000178935
Phylogenetic Trees/Animal Genes : TreeFamZNF552
HOVERGENQ9H707
HOGENOMQ9H707
Homologs : HomoloGeneZNF552
Homology/Alignments : Family Browser (UCSC)ZNF552
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF552 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF552
dbVarZNF552
ClinVarZNF552
1000_GenomesZNF552 
Exome Variant ServerZNF552
ExAC (Exome Aggregation Consortium)ZNF552 (select the gene name)
Genetic variants : HAPMAP79818
Genomic Variants (DGV)ZNF552 [DGVbeta]
DECIPHER (Syndromes)19:58318450-58326281  ENSG00000178935
CONAN: Copy Number AnalysisZNF552 
Mutations
ICGC Data PortalZNF552 
TCGA Data PortalZNF552 
Broad Tumor PortalZNF552
OASIS PortalZNF552 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF552  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF552
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF552
DgiDB (Drug Gene Interaction Database)ZNF552
DoCM (Curated mutations)ZNF552 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF552 (select a term)
intoGenZNF552
Cancer3DZNF552(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZNF552
Genetic Testing Registry ZNF552
NextProtQ9H707 [Medical]
TSGene79818
GENETestsZNF552
Huge Navigator ZNF552 [HugePedia]
snp3D : Map Gene to Disease79818
BioCentury BCIQZNF552
ClinGenZNF552
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79818
Chemical/Pharm GKB GenePA134986961
Clinical trialZNF552
Miscellaneous
canSAR (ICR)ZNF552 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF552
EVEXZNF552
GoPubMedZNF552
iHOPZNF552
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:53:18 CET 2017

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