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ZNF554 (zinc finger protein 554)

Identity

Alias_symbol (synonym)FLJ34817
Other alias-
HGNC (Hugo) ZNF554
LocusID (NCBI) 115196
Atlas_Id 76230
Location 19p13.3  [Link to chromosome band 19p13]
Location_base_pair Starts at 2819874 and ends at 2836735 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
TJP3 (19p13.3) / ZNF554 (19p13.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF554   26629
Cards
Entrez_Gene (NCBI)ZNF554  115196  zinc finger protein 554
Aliases
GeneCards (Weizmann)ZNF554
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr19:2819874-2836735 [Contig_View]  ZNF554 [Vega]
TCGA cBioPortalZNF554
AceView (NCBI)ZNF554
Genatlas (Paris)ZNF554
WikiGenes115196
SOURCE (Princeton)ZNF554
Genetics Home Reference (NIH)ZNF554
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF554  -     chr19:2819874-2836735 +  19p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF554  -     19p13.3   [Description]    (hg19-Feb_2009)
EnsemblZNF554 - 19p13.3 [CytoView hg19]  ZNF554 - 19p13.3 [CytoView hg38]
Mapping of homologs : NCBIZNF554 [Mapview hg19]  ZNF554 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK027860 AK092136 AK299752 BC000113 BC047777
RefSeq transcript (Entrez)NM_001102651 NM_152303
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF554
Cluster EST : UnigeneHs.307043 [ NCBI ]
CGAP (NCI)Hs.307043
Gene ExpressionZNF554 [ NCBI-GEO ]   ZNF554 [ EBI - ARRAY_EXPRESS ]   ZNF554 [ SEEK ]   ZNF554 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF554 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)115196
GTEX Portal (Tissue expression)ZNF554
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86TJ5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86TJ5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86TJ5
Splice isoforms : SwissVarQ86TJ5
PhosPhoSitePlusQ86TJ5
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)    zf-C2H2 (PF00096)    zf-C2H2_6 (PF13912)   
Domain families : Pfam (NCBI)pfam01352    pfam00096    pfam13912   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF554
DMDM Disease mutations115196
Blocks (Seattle)ZNF554
SuperfamilyQ86TJ5
Peptide AtlasQ86TJ5
HPRD15837
IPIIPI00032442   
Protein Interaction databases
DIP (DOE-UCLA)Q86TJ5
IntAct (EBI)Q86TJ5
BioGRIDZNF554
STRING (EMBL)ZNF554
ZODIACZNF554
Ontologies - Pathways
QuickGOQ86TJ5
Ontology : AmiGODNA binding'nbs;&jbsp;nucleus  nucleolus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  nucleus  nucleolus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF554
Atlas of Cancer Signalling NetworkZNF554
Wikipedia pathwaysZNF554
Orthology - Evolution
OrthoDB115196
Phylogenetic Trees/Animal Genes : TreeFamZNF554
HOVERGENQ86TJ5
HOGENOMQ86TJ5
Homologs : HomoloGeneZNF554
Homology/Alignments : Family Browser (UCSC)ZNF554
Gene fusions - Rearrangements
Tumor Fusion PortalZNF554
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF554 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF554
dbVarZNF554
ClinVarZNF554
1000_GenomesZNF554 
Exome Variant ServerZNF554
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP115196
Genomic Variants (DGV)ZNF554 [DGVbeta]
DECIPHERZNF554 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF554 
Mutations
ICGC Data PortalZNF554 
TCGA Data PortalZNF554 
Broad Tumor PortalZNF554
OASIS PortalZNF554 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF554  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF554
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF554
DgiDB (Drug Gene Interaction Database)ZNF554
DoCM (Curated mutations)ZNF554 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF554 (select a term)
intoGenZNF554
Cancer3DZNF554(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETZNF554
MedgenZNF554
Genetic Testing Registry ZNF554
NextProtQ86TJ5 [Medical]
TSGene115196
GENETestsZNF554
Target ValidationZNF554
Huge Navigator ZNF554 [HugePedia]
snp3D : Map Gene to Disease115196
BioCentury BCIQZNF554
ClinGenZNF554
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD115196
Chemical/Pharm GKB GenePA134915990
Clinical trialZNF554
Miscellaneous
canSAR (ICR)ZNF554 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF554
EVEXZNF554
GoPubMedZNF554
iHOPZNF554
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:40:43 CET 2017

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