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ZNF555 (zinc finger protein 555)

Identity

Alias_symbol (synonym)MGC26707
Other alias-
HGNC (Hugo) ZNF555
LocusID (NCBI) 148254
Atlas_Id 76231
Location 19p13.3  [Link to chromosome band 19p13]
Location_base_pair Starts at 2841433 and ends at 2860472 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF555   28382
Cards
Entrez_Gene (NCBI)ZNF555  148254  zinc finger protein 555
Aliases
GeneCards (Weizmann)ZNF555
Ensembl hg19 (Hinxton)ENSG00000186300 [Gene_View]  chr19:2841433-2860472 [Contig_View]  ZNF555 [Vega]
Ensembl hg38 (Hinxton)ENSG00000186300 [Gene_View]  chr19:2841433-2860472 [Contig_View]  ZNF555 [Vega]
ICGC DataPortalENSG00000186300
TCGA cBioPortalZNF555
AceView (NCBI)ZNF555
Genatlas (Paris)ZNF555
WikiGenes148254
SOURCE (Princeton)ZNF555
Genetics Home Reference (NIH)ZNF555
Genomic and cartography
GoldenPath hg19 (UCSC)ZNF555  -     chr19:2841433-2860472 +  19p13.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ZNF555  -     19p13.3   [Description]    (hg38-Dec_2013)
EnsemblZNF555 - 19p13.3 [CytoView hg19]  ZNF555 - 19p13.3 [CytoView hg38]
Mapping of homologs : NCBIZNF555 [Mapview hg19]  ZNF555 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF052118 AK056659 AK093163 AK123888 AK292954
RefSeq transcript (Entrez)NM_001172775 NM_152791
RefSeq genomic (Entrez)NC_000019 NC_018930 NT_011295 NW_004929412
Consensus coding sequences : CCDS (NCBI)ZNF555
Cluster EST : UnigeneHs.47712 [ NCBI ]
CGAP (NCI)Hs.47712
Alternative Splicing GalleryENSG00000186300
Gene ExpressionZNF555 [ NCBI-GEO ]   ZNF555 [ EBI - ARRAY_EXPRESS ]   ZNF555 [ SEEK ]   ZNF555 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF555 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)148254
GTEX Portal (Tissue expression)ZNF555
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NEP9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NEP9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NEP9
Splice isoforms : SwissVarQ8NEP9
PhosPhoSitePlusQ8NEP9
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Krueppel-associated_box    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)   
Domain families : Pfam (NCBI)pfam01352   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF555
DMDM Disease mutations148254
Blocks (Seattle)ZNF555
SuperfamilyQ8NEP9
Human Protein AtlasENSG00000186300
Peptide AtlasQ8NEP9
HPRD15838
IPIIPI00402144   IPI00167903   
Protein Interaction databases
DIP (DOE-UCLA)Q8NEP9
IntAct (EBI)Q8NEP9
FunCoupENSG00000186300
BioGRIDZNF555
STRING (EMBL)ZNF555
ZODIACZNF555
Ontologies - Pathways
QuickGOQ8NEP9
Ontology : AmiGODNA binding  protein binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  protein binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF555
Atlas of Cancer Signalling NetworkZNF555
Wikipedia pathwaysZNF555
Orthology - Evolution
OrthoDB148254
GeneTree (enSembl)ENSG00000186300
Phylogenetic Trees/Animal Genes : TreeFamZNF555
HOVERGENQ8NEP9
HOGENOMQ8NEP9
Homologs : HomoloGeneZNF555
Homology/Alignments : Family Browser (UCSC)ZNF555
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF555 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF555
dbVarZNF555
ClinVarZNF555
1000_GenomesZNF555 
Exome Variant ServerZNF555
ExAC (Exome Aggregation Consortium)ZNF555 (select the gene name)
Genetic variants : HAPMAP148254
Genomic Variants (DGV)ZNF555 [DGVbeta]
DECIPHER (Syndromes)19:2841433-2860472  ENSG00000186300
CONAN: Copy Number AnalysisZNF555 
Mutations
ICGC Data PortalZNF555 
TCGA Data PortalZNF555 
Broad Tumor PortalZNF555
OASIS PortalZNF555 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF555  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF555
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF555
DgiDB (Drug Gene Interaction Database)ZNF555
DoCM (Curated mutations)ZNF555 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF555 (select a term)
intoGenZNF555
Cancer3DZNF555(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZNF555
Genetic Testing Registry ZNF555
NextProtQ8NEP9 [Medical]
TSGene148254
GENETestsZNF555
Huge Navigator ZNF555 [HugePedia]
snp3D : Map Gene to Disease148254
BioCentury BCIQZNF555
ClinGenZNF555
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD148254
Chemical/Pharm GKB GenePA134956715
Clinical trialZNF555
Miscellaneous
canSAR (ICR)ZNF555 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF555
EVEXZNF555
GoPubMedZNF555
iHOPZNF555
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:53:18 CET 2017

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