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ZNF556 (zinc finger protein 556)

Identity

Alias_symbol (synonym)FLJ11637
Other alias-
HGNC (Hugo) ZNF556
LocusID (NCBI) 80032
Atlas_Id 76232
Location 19p13.3  [Link to chromosome band 19p13]
Location_base_pair Starts at 2867335 and ends at 2878505 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
GTF2H3 (12q24.31) / ZNF556 (19p13.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF556   25669
Cards
Entrez_Gene (NCBI)ZNF556  80032  zinc finger protein 556
Aliases
GeneCards (Weizmann)ZNF556
Ensembl hg19 (Hinxton)ENSG00000172000 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000172000 [Gene_View]  chr19:2867335-2878505 [Contig_View]  ZNF556 [Vega]
ICGC DataPortalENSG00000172000
TCGA cBioPortalZNF556
AceView (NCBI)ZNF556
Genatlas (Paris)ZNF556
WikiGenes80032
SOURCE (Princeton)ZNF556
Genetics Home Reference (NIH)ZNF556
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF556  -     chr19:2867335-2878505 +  19p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF556  -     19p13.3   [Description]    (hg19-Feb_2009)
EnsemblZNF556 - 19p13.3 [CytoView hg19]  ZNF556 - 19p13.3 [CytoView hg38]
Mapping of homologs : NCBIZNF556 [Mapview hg19]  ZNF556 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK021699 AK225297 BC009374 EU446534
RefSeq transcript (Entrez)NM_001300843 NM_024967
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF556
Cluster EST : UnigeneHs.287433 [ NCBI ]
CGAP (NCI)Hs.287433
Alternative Splicing GalleryENSG00000172000
Gene ExpressionZNF556 [ NCBI-GEO ]   ZNF556 [ EBI - ARRAY_EXPRESS ]   ZNF556 [ SEEK ]   ZNF556 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF556 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)80032
GTEX Portal (Tissue expression)ZNF556
Human Protein AtlasENSG00000172000-ZNF556 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9HAH1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9HAH1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9HAH1
Splice isoforms : SwissVarQ9HAH1
PhosPhoSitePlusQ9HAH1
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)    zf-C2H2 (PF00096)    zf-C2H2_6 (PF13912)   
Domain families : Pfam (NCBI)pfam01352    pfam00096    pfam13912   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF556
DMDM Disease mutations80032
Blocks (Seattle)ZNF556
SuperfamilyQ9HAH1
Human Protein Atlas [tissue]ENSG00000172000-ZNF556 [tissue]
Peptide AtlasQ9HAH1
HPRD15839
IPIIPI00017265   
Protein Interaction databases
DIP (DOE-UCLA)Q9HAH1
IntAct (EBI)Q9HAH1
FunCoupENSG00000172000
BioGRIDZNF556
STRING (EMBL)ZNF556
ZODIACZNF556
Ontologies - Pathways
QuickGOQ9HAH1
Ontology : AmiGODNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF556
Atlas of Cancer Signalling NetworkZNF556
Wikipedia pathwaysZNF556
Orthology - Evolution
OrthoDB80032
GeneTree (enSembl)ENSG00000172000
Phylogenetic Trees/Animal Genes : TreeFamZNF556
HOVERGENQ9HAH1
HOGENOMQ9HAH1
Homologs : HomoloGeneZNF556
Homology/Alignments : Family Browser (UCSC)ZNF556
Gene fusions - Rearrangements
Tumor Fusion PortalZNF556
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF556 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF556
dbVarZNF556
ClinVarZNF556
1000_GenomesZNF556 
Exome Variant ServerZNF556
ExAC (Exome Aggregation Consortium)ENSG00000172000
GNOMAD BrowserENSG00000172000
Genetic variants : HAPMAP80032
Genomic Variants (DGV)ZNF556 [DGVbeta]
DECIPHERZNF556 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF556 
Mutations
ICGC Data PortalZNF556 
TCGA Data PortalZNF556 
Broad Tumor PortalZNF556
OASIS PortalZNF556 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF556  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF556
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF556
DgiDB (Drug Gene Interaction Database)ZNF556
DoCM (Curated mutations)ZNF556 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF556 (select a term)
intoGenZNF556
Cancer3DZNF556(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETZNF556
MedgenZNF556
Genetic Testing Registry ZNF556
NextProtQ9HAH1 [Medical]
TSGene80032
GENETestsZNF556
Target ValidationZNF556
Huge Navigator ZNF556 [HugePedia]
snp3D : Map Gene to Disease80032
BioCentury BCIQZNF556
ClinGenZNF556
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD80032
Chemical/Pharm GKB GenePA134949188
Clinical trialZNF556
Miscellaneous
canSAR (ICR)ZNF556 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF556
EVEXZNF556
GoPubMedZNF556
iHOPZNF556
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:40:44 CET 2017

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