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ZNF557 (zinc finger protein 557)

Identity

Alias_symbol (synonym)MGC4054
Other alias-
HGNC (Hugo) ZNF557
LocusID (NCBI) 79230
Atlas_Id 76233
Location 19p13.2  [Link to chromosome band 19p13]
Location_base_pair Starts at 7069471 and ends at 7087978 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
ZNF557 (19p13.2) / SIGLECL1 (19q13.41)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF557   28632
Cards
Entrez_Gene (NCBI)ZNF557  79230  zinc finger protein 557
Aliases
GeneCards (Weizmann)ZNF557
Ensembl hg19 (Hinxton)ENSG00000130544 [Gene_View]  chr19:7069471-7087978 [Contig_View]  ZNF557 [Vega]
Ensembl hg38 (Hinxton)ENSG00000130544 [Gene_View]  chr19:7069471-7087978 [Contig_View]  ZNF557 [Vega]
ICGC DataPortalENSG00000130544
TCGA cBioPortalZNF557
AceView (NCBI)ZNF557
Genatlas (Paris)ZNF557
WikiGenes79230
SOURCE (Princeton)ZNF557
Genetics Home Reference (NIH)ZNF557
Genomic and cartography
GoldenPath hg19 (UCSC)ZNF557  -     chr19:7069471-7087978 +  19p13.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ZNF557  -     19p13.2   [Description]    (hg38-Dec_2013)
EnsemblZNF557 - 19p13.2 [CytoView hg19]  ZNF557 - 19p13.2 [CytoView hg38]
Mapping of homologs : NCBIZNF557 [Mapview hg19]  ZNF557 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK095524 AK297283 AK315405 BC003020 BC031208
RefSeq transcript (Entrez)NM_001044387 NM_001044388 NM_024341
RefSeq genomic (Entrez)NC_000019 NC_018930 NT_011295 NW_004929412
Consensus coding sequences : CCDS (NCBI)ZNF557
Cluster EST : UnigeneHs.591380 [ NCBI ]
CGAP (NCI)Hs.591380
Alternative Splicing GalleryENSG00000130544
Gene ExpressionZNF557 [ NCBI-GEO ]   ZNF557 [ EBI - ARRAY_EXPRESS ]   ZNF557 [ SEEK ]   ZNF557 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF557 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79230
GTEX Portal (Tissue expression)ZNF557
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N988   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N988  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N988
Splice isoforms : SwissVarQ8N988
PhosPhoSitePlusQ8N988
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Krueppel-associated_box    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)   
Domain families : Pfam (NCBI)pfam01352   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF557
DMDM Disease mutations79230
Blocks (Seattle)ZNF557
SuperfamilyQ8N988
Human Protein AtlasENSG00000130544
Peptide AtlasQ8N988
HPRD15840
IPIIPI00607687   IPI00013641   
Protein Interaction databases
DIP (DOE-UCLA)Q8N988
IntAct (EBI)Q8N988
FunCoupENSG00000130544
BioGRIDZNF557
STRING (EMBL)ZNF557
ZODIACZNF557
Ontologies - Pathways
QuickGOQ8N988
Ontology : AmiGODNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF557
Atlas of Cancer Signalling NetworkZNF557
Wikipedia pathwaysZNF557
Orthology - Evolution
OrthoDB79230
GeneTree (enSembl)ENSG00000130544
Phylogenetic Trees/Animal Genes : TreeFamZNF557
HOVERGENQ8N988
HOGENOMQ8N988
Homologs : HomoloGeneZNF557
Homology/Alignments : Family Browser (UCSC)ZNF557
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF557 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF557
dbVarZNF557
ClinVarZNF557
1000_GenomesZNF557 
Exome Variant ServerZNF557
ExAC (Exome Aggregation Consortium)ZNF557 (select the gene name)
Genetic variants : HAPMAP79230
Genomic Variants (DGV)ZNF557 [DGVbeta]
DECIPHER (Syndromes)19:7069471-7087978  ENSG00000130544
CONAN: Copy Number AnalysisZNF557 
Mutations
ICGC Data PortalZNF557 
TCGA Data PortalZNF557 
Broad Tumor PortalZNF557
OASIS PortalZNF557 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF557  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF557
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF557
DgiDB (Drug Gene Interaction Database)ZNF557
DoCM (Curated mutations)ZNF557 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF557 (select a term)
intoGenZNF557
Cancer3DZNF557(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZNF557
Genetic Testing Registry ZNF557
NextProtQ8N988 [Medical]
TSGene79230
GENETestsZNF557
Huge Navigator ZNF557 [HugePedia]
snp3D : Map Gene to Disease79230
BioCentury BCIQZNF557
ClinGenZNF557
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79230
Chemical/Pharm GKB GenePA134866521
Clinical trialZNF557
Miscellaneous
canSAR (ICR)ZNF557 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF557
EVEXZNF557
GoPubMedZNF557
iHOPZNF557
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:53:19 CET 2017

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