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ZNF558 (zinc finger protein 558)

Identity

Alias_symbol (synonym)FLJ30932
Other alias-
HGNC (Hugo) ZNF558
LocusID (NCBI) 148156
Atlas_Id 76234
Location 19p13.2  [Link to chromosome band 19p13]
Location_base_pair Starts at 8920252 and ends at 8932739 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF558   26422
Cards
Entrez_Gene (NCBI)ZNF558  148156  zinc finger protein 558
Aliases
GeneCards (Weizmann)ZNF558
Ensembl hg19 (Hinxton)ENSG00000167785 [Gene_View]  chr19:8920252-8932739 [Contig_View]  ZNF558 [Vega]
Ensembl hg38 (Hinxton)ENSG00000167785 [Gene_View]  chr19:8920252-8932739 [Contig_View]  ZNF558 [Vega]
ICGC DataPortalENSG00000167785
TCGA cBioPortalZNF558
AceView (NCBI)ZNF558
Genatlas (Paris)ZNF558
WikiGenes148156
SOURCE (Princeton)ZNF558
Genetics Home Reference (NIH)ZNF558
Genomic and cartography
GoldenPath hg19 (UCSC)ZNF558  -     chr19:8920252-8932739 -  19p13.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ZNF558  -     19p13.2   [Description]    (hg38-Dec_2013)
EnsemblZNF558 - 19p13.2 [CytoView hg19]  ZNF558 - 19p13.2 [CytoView hg38]
Mapping of homologs : NCBIZNF558 [Mapview hg19]  ZNF558 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK055494 AK291265 AK301664 AK307200 BC064356
RefSeq transcript (Entrez)NM_001304350 NM_144693
RefSeq genomic (Entrez)NC_000019 NC_018930 NT_011295 NW_004929414
Consensus coding sequences : CCDS (NCBI)ZNF558
Cluster EST : UnigeneHs.659797 [ NCBI ]
CGAP (NCI)Hs.659797
Alternative Splicing GalleryENSG00000167785
Gene ExpressionZNF558 [ NCBI-GEO ]   ZNF558 [ EBI - ARRAY_EXPRESS ]   ZNF558 [ SEEK ]   ZNF558 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF558 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)148156
GTEX Portal (Tissue expression)ZNF558
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96NG5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96NG5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96NG5
Splice isoforms : SwissVarQ96NG5
PhosPhoSitePlusQ96NG5
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Krueppel-associated_box    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)   
Domain families : Pfam (NCBI)pfam01352   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF558
DMDM Disease mutations148156
Blocks (Seattle)ZNF558
SuperfamilyQ96NG5
Human Protein AtlasENSG00000167785
Peptide AtlasQ96NG5
HPRD15841
IPIIPI00177520   IPI01011275   
Protein Interaction databases
DIP (DOE-UCLA)Q96NG5
IntAct (EBI)Q96NG5
FunCoupENSG00000167785
BioGRIDZNF558
STRING (EMBL)ZNF558
ZODIACZNF558
Ontologies - Pathways
QuickGOQ96NG5
Ontology : AmiGODNA binding  cellular_component  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  biological_process  metal ion binding  
Ontology : EGO-EBIDNA binding  cellular_component  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  biological_process  metal ion binding  
NDEx NetworkZNF558
Atlas of Cancer Signalling NetworkZNF558
Wikipedia pathwaysZNF558
Orthology - Evolution
OrthoDB148156
GeneTree (enSembl)ENSG00000167785
Phylogenetic Trees/Animal Genes : TreeFamZNF558
HOVERGENQ96NG5
HOGENOMQ96NG5
Homologs : HomoloGeneZNF558
Homology/Alignments : Family Browser (UCSC)ZNF558
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF558 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF558
dbVarZNF558
ClinVarZNF558
1000_GenomesZNF558 
Exome Variant ServerZNF558
ExAC (Exome Aggregation Consortium)ZNF558 (select the gene name)
Genetic variants : HAPMAP148156
Genomic Variants (DGV)ZNF558 [DGVbeta]
DECIPHER (Syndromes)19:8920252-8932739  ENSG00000167785
CONAN: Copy Number AnalysisZNF558 
Mutations
ICGC Data PortalZNF558 
TCGA Data PortalZNF558 
Broad Tumor PortalZNF558
OASIS PortalZNF558 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF558  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF558
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF558
DgiDB (Drug Gene Interaction Database)ZNF558
DoCM (Curated mutations)ZNF558 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF558 (select a term)
intoGenZNF558
Cancer3DZNF558(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZNF558
Genetic Testing Registry ZNF558
NextProtQ96NG5 [Medical]
TSGene148156
GENETestsZNF558
Huge Navigator ZNF558 [HugePedia]
snp3D : Map Gene to Disease148156
BioCentury BCIQZNF558
ClinGenZNF558
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD148156
Chemical/Pharm GKB GenePA134899314
Clinical trialZNF558
Miscellaneous
canSAR (ICR)ZNF558 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF558
EVEXZNF558
GoPubMedZNF558
iHOPZNF558
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:53:19 CET 2017

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