Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

ZNF559-ZNF177 (ZNF559-ZNF177 readthrough)

Identity

Other alias-
HGNC (Hugo) ZNF559-ZNF177
LocusID (NCBI) 100529215
Atlas_Id 76236
Location 19p13.2  [Link to chromosome band 19p13]
Location_base_pair Starts at 9324226 and ends at 9382617 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF559-ZNF177   42964
Cards
Entrez_Gene (NCBI)ZNF559-ZNF177  100529215  ZNF559-ZNF177 readthrough
Aliases
GeneCards (Weizmann)ZNF559-ZNF177
Ensembl hg19 (Hinxton)ENSG00000270011 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000270011 [Gene_View]  chr19:9324226-9382617 [Contig_View]  ZNF559-ZNF177 [Vega]
ICGC DataPortalENSG00000270011
TCGA cBioPortalZNF559-ZNF177
AceView (NCBI)ZNF559-ZNF177
Genatlas (Paris)ZNF559-ZNF177
WikiGenes100529215
SOURCE (Princeton)ZNF559-ZNF177
Genetics Home Reference (NIH)ZNF559-ZNF177
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF559-ZNF177  -     chr19:9324226-9382617 +  19p13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF559-ZNF177  -     19p13.2   [Description]    (hg19-Feb_2009)
EnsemblZNF559-ZNF177 - 19p13.2 [CytoView hg19]  ZNF559-ZNF177 - 19p13.2 [CytoView hg38]
Mapping of homologs : NCBIZNF559-ZNF177 [Mapview hg19]  ZNF559-ZNF177 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC034489 U37251
RefSeq transcript (Entrez)NM_001172650 NM_001202425
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF559-ZNF177
Cluster EST : UnigeneHs.728944 [ NCBI ]
CGAP (NCI)Hs.728944
Alternative Splicing GalleryENSG00000270011
Gene ExpressionZNF559-ZNF177 [ NCBI-GEO ]   ZNF559-ZNF177 [ EBI - ARRAY_EXPRESS ]   ZNF559-ZNF177 [ SEEK ]   ZNF559-ZNF177 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF559-ZNF177 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100529215
GTEX Portal (Tissue expression)ZNF559-ZNF177
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ13360   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ13360  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ13360
Splice isoforms : SwissVarQ13360
PhosPhoSitePlusQ13360
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)    zf-C2H2 (PF00096)    zf-C2H2_6 (PF13912)    zf-H2C2_2 (PF13465)   
Domain families : Pfam (NCBI)pfam01352    pfam00096    pfam13912    pfam13465   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF559-ZNF177
DMDM Disease mutations100529215
Blocks (Seattle)ZNF559-ZNF177
SuperfamilyQ13360
Human Protein AtlasENSG00000270011
Peptide AtlasQ13360
IPIIPI00012830   IPI00909512   IPI00980091   IPI00884250   
Protein Interaction databases
DIP (DOE-UCLA)Q13360
IntAct (EBI)Q13360
FunCoupENSG00000270011
BioGRIDZNF559-ZNF177
STRING (EMBL)ZNF559-ZNF177
ZODIACZNF559-ZNF177
Ontologies - Pathways
QuickGOQ13360
Ontology : AmiGOnegative regulation of transcription from RNA polymerase II promoter  DNA binding  protein binding  nucleus  transcription, DNA-templated  metal ion binding  blood microparticle  
Ontology : EGO-EBInegative regulation of transcription from RNA polymerase II promoter  DNA binding  protein binding  nucleus  transcription, DNA-templated  metal ion binding  blood microparticle  
NDEx NetworkZNF559-ZNF177
Atlas of Cancer Signalling NetworkZNF559-ZNF177
Wikipedia pathwaysZNF559-ZNF177
Orthology - Evolution
OrthoDB100529215
GeneTree (enSembl)ENSG00000270011
Phylogenetic Trees/Animal Genes : TreeFamZNF559-ZNF177
HOVERGENQ13360
HOGENOMQ13360
Homologs : HomoloGeneZNF559-ZNF177
Homology/Alignments : Family Browser (UCSC)ZNF559-ZNF177
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF559-ZNF177 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF559-ZNF177
dbVarZNF559-ZNF177
ClinVarZNF559-ZNF177
1000_GenomesZNF559-ZNF177 
Exome Variant ServerZNF559-ZNF177
ExAC (Exome Aggregation Consortium)ZNF559-ZNF177 (select the gene name)
Genetic variants : HAPMAP100529215
Genomic Variants (DGV)ZNF559-ZNF177 [DGVbeta]
DECIPHERZNF559-ZNF177 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF559-ZNF177 
Mutations
ICGC Data PortalZNF559-ZNF177 
TCGA Data PortalZNF559-ZNF177 
Broad Tumor PortalZNF559-ZNF177
OASIS PortalZNF559-ZNF177 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDZNF559-ZNF177
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF559-ZNF177
DgiDB (Drug Gene Interaction Database)ZNF559-ZNF177
DoCM (Curated mutations)ZNF559-ZNF177 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF559-ZNF177 (select a term)
intoGenZNF559-ZNF177
Cancer3DZNF559-ZNF177(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZNF559-ZNF177
Genetic Testing Registry ZNF559-ZNF177
NextProtQ13360 [Medical]
TSGene100529215
GENETestsZNF559-ZNF177
Target ValidationZNF559-ZNF177
Huge Navigator ZNF559-ZNF177 [HugePedia]
snp3D : Map Gene to Disease100529215
BioCentury BCIQZNF559-ZNF177
ClinGenZNF559-ZNF177
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100529215
Clinical trialZNF559-ZNF177
Miscellaneous
canSAR (ICR)ZNF559-ZNF177 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF559-ZNF177
EVEXZNF559-ZNF177
GoPubMedZNF559-ZNF177
iHOPZNF559-ZNF177
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:44:56 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.