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ZNF559 (zinc finger protein 559)

Identity

Alias_symbol (synonym)MGC13105
Other aliasNBLA00121
HGNC (Hugo) ZNF559
LocusID (NCBI) 84527
Atlas_Id 76235
Location 19p13.2  [Link to chromosome band 19p13]
Location_base_pair Starts at 9323772 and ends at 9343845 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ZNF559 (19p13.2) / OXR1 (8q23.1)ZNF559 (19p13.2) / ZNF177 (19p13.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF559   28197
Cards
Entrez_Gene (NCBI)ZNF559  84527  zinc finger protein 559
AliasesNBLA00121
GeneCards (Weizmann)ZNF559
Ensembl hg19 (Hinxton)ENSG00000188321 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000188321 [Gene_View]  chr19:9323772-9343845 [Contig_View]  ZNF559 [Vega]
ICGC DataPortalENSG00000188321
TCGA cBioPortalZNF559
AceView (NCBI)ZNF559
Genatlas (Paris)ZNF559
WikiGenes84527
SOURCE (Princeton)ZNF559
Genetics Home Reference (NIH)ZNF559
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF559  -     chr19:9323772-9343845 +  19p13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF559  -     19p13.2   [Description]    (hg19-Feb_2009)
EnsemblZNF559 - 19p13.2 [CytoView hg19]  ZNF559 - 19p13.2 [CytoView hg38]
Mapping of homologs : NCBIZNF559 [Mapview hg19]  ZNF559 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB075488 AK027700 AK056489 AK092348 AK298169
RefSeq transcript (Entrez)NM_001202406 NM_001202407 NM_001202408 NM_001202409 NM_001202410 NM_001202411 NM_001202412 NM_032497
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF559
Cluster EST : UnigeneHs.744296 [ NCBI ]
CGAP (NCI)Hs.744296
Alternative Splicing GalleryENSG00000188321
Gene ExpressionZNF559 [ NCBI-GEO ]   ZNF559 [ EBI - ARRAY_EXPRESS ]   ZNF559 [ SEEK ]   ZNF559 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF559 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84527
GTEX Portal (Tissue expression)ZNF559
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BR84   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BR84  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BR84
Splice isoforms : SwissVarQ9BR84
PhosPhoSitePlusQ9BR84
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)    zf-C2H2 (PF00096)   
Domain families : Pfam (NCBI)pfam01352    pfam00096   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF559
DMDM Disease mutations84527
Blocks (Seattle)ZNF559
SuperfamilyQ9BR84
Human Protein AtlasENSG00000188321
Peptide AtlasQ9BR84
HPRD18352
IPIIPI00022177   IPI00981159   IPI00645804   IPI00979349   IPI00978812   IPI00978100   
Protein Interaction databases
DIP (DOE-UCLA)Q9BR84
IntAct (EBI)Q9BR84
FunCoupENSG00000188321
BioGRIDZNF559
STRING (EMBL)ZNF559
ZODIACZNF559
Ontologies - Pathways
QuickGOQ9BR84
Ontology : AmiGODNA binding  protein binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  protein binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF559
Atlas of Cancer Signalling NetworkZNF559
Wikipedia pathwaysZNF559
Orthology - Evolution
OrthoDB84527
GeneTree (enSembl)ENSG00000188321
Phylogenetic Trees/Animal Genes : TreeFamZNF559
HOVERGENQ9BR84
HOGENOMQ9BR84
Homologs : HomoloGeneZNF559
Homology/Alignments : Family Browser (UCSC)ZNF559
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF559 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF559
dbVarZNF559
ClinVarZNF559
1000_GenomesZNF559 
Exome Variant ServerZNF559
ExAC (Exome Aggregation Consortium)ZNF559 (select the gene name)
Genetic variants : HAPMAP84527
Genomic Variants (DGV)ZNF559 [DGVbeta]
DECIPHERZNF559 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF559 
Mutations
ICGC Data PortalZNF559 
TCGA Data PortalZNF559 
Broad Tumor PortalZNF559
OASIS PortalZNF559 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF559  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF559
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF559
DgiDB (Drug Gene Interaction Database)ZNF559
DoCM (Curated mutations)ZNF559 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF559 (select a term)
intoGenZNF559
Cancer3DZNF559(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZNF559
Genetic Testing Registry ZNF559
NextProtQ9BR84 [Medical]
TSGene84527
GENETestsZNF559
Target ValidationZNF559
Huge Navigator ZNF559 [HugePedia]
snp3D : Map Gene to Disease84527
BioCentury BCIQZNF559
ClinGenZNF559
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84527
Chemical/Pharm GKB GenePA134891126
Clinical trialZNF559
Miscellaneous
canSAR (ICR)ZNF559 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF559
EVEXZNF559
GoPubMedZNF559
iHOPZNF559
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:50:43 CEST 2017

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