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ZNF560 (zinc finger protein 560)

Identity

Alias_symbol (synonym)FLJ31986
Other alias-
HGNC (Hugo) ZNF560
LocusID (NCBI) 147741
Atlas_Id 76237
Location 19p13.2  [Link to chromosome band 19p13]
Location_base_pair Starts at 9577031 and ends at 9609279 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF560   26484
Cards
Entrez_Gene (NCBI)ZNF560  147741  zinc finger protein 560
Aliases
GeneCards (Weizmann)ZNF560
Ensembl hg19 (Hinxton)ENSG00000198028 [Gene_View]  chr19:9577031-9609279 [Contig_View]  ZNF560 [Vega]
Ensembl hg38 (Hinxton)ENSG00000198028 [Gene_View]  chr19:9577031-9609279 [Contig_View]  ZNF560 [Vega]
ICGC DataPortalENSG00000198028
TCGA cBioPortalZNF560
AceView (NCBI)ZNF560
Genatlas (Paris)ZNF560
WikiGenes147741
SOURCE (Princeton)ZNF560
Genetics Home Reference (NIH)ZNF560
Genomic and cartography
GoldenPath hg19 (UCSC)ZNF560  -     chr19:9577031-9609279 -  19p13.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ZNF560  -     19p13.2   [Description]    (hg38-Dec_2013)
EnsemblZNF560 - 19p13.2 [CytoView hg19]  ZNF560 - 19p13.2 [CytoView hg38]
Mapping of homologs : NCBIZNF560 [Mapview hg19]  ZNF560 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK056548 BC101039 BC101040 BC101041 BC101042
RefSeq transcript (Entrez)NM_152476
RefSeq genomic (Entrez)NC_000019 NC_018930 NT_011295 NW_004929414
Consensus coding sequences : CCDS (NCBI)ZNF560
Cluster EST : UnigeneHs.631613 [ NCBI ]
CGAP (NCI)Hs.631613
Alternative Splicing GalleryENSG00000198028
Gene ExpressionZNF560 [ NCBI-GEO ]   ZNF560 [ EBI - ARRAY_EXPRESS ]   ZNF560 [ SEEK ]   ZNF560 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF560 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)147741
GTEX Portal (Tissue expression)ZNF560
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96MR9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96MR9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96MR9
Splice isoforms : SwissVarQ96MR9
PhosPhoSitePlusQ96MR9
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Krueppel-associated_box    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)   
Domain families : Pfam (NCBI)pfam01352   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF560
DMDM Disease mutations147741
Blocks (Seattle)ZNF560
SuperfamilyQ96MR9
Human Protein AtlasENSG00000198028
Peptide AtlasQ96MR9
HPRD15842
IPIIPI00043307   
Protein Interaction databases
DIP (DOE-UCLA)Q96MR9
IntAct (EBI)Q96MR9
FunCoupENSG00000198028
BioGRIDZNF560
STRING (EMBL)ZNF560
ZODIACZNF560
Ontologies - Pathways
QuickGOQ96MR9
Ontology : AmiGODNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF560
Atlas of Cancer Signalling NetworkZNF560
Wikipedia pathwaysZNF560
Orthology - Evolution
OrthoDB147741
GeneTree (enSembl)ENSG00000198028
Phylogenetic Trees/Animal Genes : TreeFamZNF560
HOVERGENQ96MR9
HOGENOMQ96MR9
Homologs : HomoloGeneZNF560
Homology/Alignments : Family Browser (UCSC)ZNF560
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF560 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF560
dbVarZNF560
ClinVarZNF560
1000_GenomesZNF560 
Exome Variant ServerZNF560
ExAC (Exome Aggregation Consortium)ZNF560 (select the gene name)
Genetic variants : HAPMAP147741
Genomic Variants (DGV)ZNF560 [DGVbeta]
DECIPHER (Syndromes)19:9577031-9609279  ENSG00000198028
CONAN: Copy Number AnalysisZNF560 
Mutations
ICGC Data PortalZNF560 
TCGA Data PortalZNF560 
Broad Tumor PortalZNF560
OASIS PortalZNF560 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF560  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF560
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF560
DgiDB (Drug Gene Interaction Database)ZNF560
DoCM (Curated mutations)ZNF560 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF560 (select a term)
intoGenZNF560
Cancer3DZNF560(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZNF560
Genetic Testing Registry ZNF560
NextProtQ96MR9 [Medical]
TSGene147741
GENETestsZNF560
Huge Navigator ZNF560 [HugePedia]
snp3D : Map Gene to Disease147741
BioCentury BCIQZNF560
ClinGenZNF560
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD147741
Chemical/Pharm GKB GenePA134992071
Clinical trialZNF560
Miscellaneous
canSAR (ICR)ZNF560 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF560
EVEXZNF560
GoPubMedZNF560
iHOPZNF560
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:53:20 CET 2017

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