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ZNF561-AS1 (ZNF561 antisense RNA 1 (head to head))

Identity

Alias_namesC19orf82
chromosome 19 open reading frame 82
Other alias
HGNC (Hugo) ZNF561-AS1
LocusID (NCBI) 284385
Atlas_Id 76239
Location 19p13.2  [Link to chromosome band 19p13]
Location_base_pair Starts at 9621517 and ends at 9634862 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF561-AS1   27613
Cards
Entrez_Gene (NCBI)ZNF561-AS1  284385  ZNF561 antisense RNA 1 (head to head)
AliasesC19orf82
GeneCards (Weizmann)ZNF561-AS1
Ensembl hg19 (Hinxton)ENSG00000267106 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000267106 [Gene_View]  chr19:9621517-9634862 [Contig_View]  ZNF561-AS1 [Vega]
ICGC DataPortalENSG00000267106
TCGA cBioPortalZNF561-AS1
AceView (NCBI)ZNF561-AS1
Genatlas (Paris)ZNF561-AS1
WikiGenes284385
SOURCE (Princeton)ZNF561-AS1
Genetics Home Reference (NIH)ZNF561-AS1
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF561-AS1  -     chr19:9621517-9634862 +  19p13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF561-AS1  -     19p13.2   [Description]    (hg19-Feb_2009)
EnsemblZNF561-AS1 - 19p13.2 [CytoView hg19]  ZNF561-AS1 - 19p13.2 [CytoView hg38]
Mapping of homologs : NCBIZNF561-AS1 [Mapview hg19]  ZNF561-AS1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK097685 AL525141 BC143540 DB487189
RefSeq transcript (Entrez)NM_001242812
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF561-AS1
Cluster EST : UnigeneHs.733676 [ NCBI ]
CGAP (NCI)Hs.733676
Alternative Splicing GalleryENSG00000267106
Gene ExpressionZNF561-AS1 [ NCBI-GEO ]   ZNF561-AS1 [ EBI - ARRAY_EXPRESS ]   ZNF561-AS1 [ SEEK ]   ZNF561-AS1 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF561-AS1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)284385
GTEX Portal (Tissue expression)ZNF561-AS1
Protein : pattern, domain, 3D structure
UniProt/SwissProtK7EIQ3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtK7EIQ3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProK7EIQ3
Splice isoforms : SwissVarK7EIQ3
PhosPhoSitePlusK7EIQ3
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)ZNF561-AS1
DMDM Disease mutations284385
Blocks (Seattle)ZNF561-AS1
SuperfamilyK7EIQ3
Human Protein AtlasENSG00000267106
Peptide AtlasK7EIQ3
Protein Interaction databases
DIP (DOE-UCLA)K7EIQ3
IntAct (EBI)K7EIQ3
FunCoupENSG00000267106
BioGRIDZNF561-AS1
STRING (EMBL)ZNF561-AS1
ZODIACZNF561-AS1
Ontologies - Pathways
QuickGOK7EIQ3
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkZNF561-AS1
Atlas of Cancer Signalling NetworkZNF561-AS1
Wikipedia pathwaysZNF561-AS1
Orthology - Evolution
OrthoDB284385
GeneTree (enSembl)ENSG00000267106
Phylogenetic Trees/Animal Genes : TreeFamZNF561-AS1
HOVERGENK7EIQ3
HOGENOMK7EIQ3
Homologs : HomoloGeneZNF561-AS1
Homology/Alignments : Family Browser (UCSC)ZNF561-AS1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF561-AS1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF561-AS1
dbVarZNF561-AS1
ClinVarZNF561-AS1
1000_GenomesZNF561-AS1 
Exome Variant ServerZNF561-AS1
ExAC (Exome Aggregation Consortium)ZNF561-AS1 (select the gene name)
Genetic variants : HAPMAP284385
Genomic Variants (DGV)ZNF561-AS1 [DGVbeta]
DECIPHERZNF561-AS1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF561-AS1 
Mutations
ICGC Data PortalZNF561-AS1 
TCGA Data PortalZNF561-AS1 
Broad Tumor PortalZNF561-AS1
OASIS PortalZNF561-AS1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDZNF561-AS1
BioMutasearch ZNF561-AS1
DgiDB (Drug Gene Interaction Database)ZNF561-AS1
DoCM (Curated mutations)ZNF561-AS1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF561-AS1 (select a term)
intoGenZNF561-AS1
Cancer3DZNF561-AS1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZNF561-AS1
Genetic Testing Registry ZNF561-AS1
NextProtK7EIQ3 [Medical]
TSGene284385
GENETestsZNF561-AS1
Target ValidationZNF561-AS1
Huge Navigator ZNF561-AS1 [HugePedia]
snp3D : Map Gene to Disease284385
BioCentury BCIQZNF561-AS1
ClinGenZNF561-AS1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD284385
Clinical trialZNF561-AS1
Miscellaneous
canSAR (ICR)ZNF561-AS1 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF561-AS1
EVEXZNF561-AS1
GoPubMedZNF561-AS1
iHOPZNF561-AS1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:44:57 CEST 2017

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