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ZNF561 (zinc finger protein 561)

Identity

Alias_symbol (synonym)MGC45408
Other alias-
HGNC (Hugo) ZNF561
LocusID (NCBI) 93134
Atlas_Id 76238
Location 19p13.2  [Link to chromosome band 19p13]
Location_base_pair Starts at 9607326 and ends at 9621263 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF561   28684
Cards
Entrez_Gene (NCBI)ZNF561  93134  zinc finger protein 561
Aliases
GeneCards (Weizmann)ZNF561
Ensembl hg19 (Hinxton)ENSG00000171469 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000171469 [Gene_View]  chr19:9607326-9621263 [Contig_View]  ZNF561 [Vega]
ICGC DataPortalENSG00000171469
TCGA cBioPortalZNF561
AceView (NCBI)ZNF561
Genatlas (Paris)ZNF561
WikiGenes93134
SOURCE (Princeton)ZNF561
Genetics Home Reference (NIH)ZNF561
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF561  -     chr19:9607326-9621263 -  19p13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF561  -     19p13.2   [Description]    (hg19-Feb_2009)
EnsemblZNF561 - 19p13.2 [CytoView hg19]  ZNF561 - 19p13.2 [CytoView hg38]
Mapping of homologs : NCBIZNF561 [Mapview hg19]  ZNF561 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK074787 AK122974 AK293004 AK304383 BC012144
RefSeq transcript (Entrez)NM_001330365 NM_152289
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF561
Cluster EST : UnigeneHs.720081 [ NCBI ]
CGAP (NCI)Hs.720081
Alternative Splicing GalleryENSG00000171469
Gene ExpressionZNF561 [ NCBI-GEO ]   ZNF561 [ EBI - ARRAY_EXPRESS ]   ZNF561 [ SEEK ]   ZNF561 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF561 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)93134
GTEX Portal (Tissue expression)ZNF561
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N587   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N587  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N587
Splice isoforms : SwissVarQ8N587
PhosPhoSitePlusQ8N587
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)    zf-C2H2 (PF00096)    zf-C2H2_6 (PF13912)   
Domain families : Pfam (NCBI)pfam01352    pfam00096    pfam13912   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF561
DMDM Disease mutations93134
Blocks (Seattle)ZNF561
SuperfamilyQ8N587
Human Protein AtlasENSG00000171469
Peptide AtlasQ8N587
HPRD15843
IPIIPI00166817   IPI00926944   IPI00926305   IPI00926576   IPI00925968   IPI00925471   IPI00925549   IPI00924911   IPI00743220   
Protein Interaction databases
DIP (DOE-UCLA)Q8N587
IntAct (EBI)Q8N587
FunCoupENSG00000171469
BioGRIDZNF561
STRING (EMBL)ZNF561
ZODIACZNF561
Ontologies - Pathways
QuickGOQ8N587
Ontology : AmiGODNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF561
Atlas of Cancer Signalling NetworkZNF561
Wikipedia pathwaysZNF561
Orthology - Evolution
OrthoDB93134
GeneTree (enSembl)ENSG00000171469
Phylogenetic Trees/Animal Genes : TreeFamZNF561
HOVERGENQ8N587
HOGENOMQ8N587
Homologs : HomoloGeneZNF561
Homology/Alignments : Family Browser (UCSC)ZNF561
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF561 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF561
dbVarZNF561
ClinVarZNF561
1000_GenomesZNF561 
Exome Variant ServerZNF561
ExAC (Exome Aggregation Consortium)ZNF561 (select the gene name)
Genetic variants : HAPMAP93134
Genomic Variants (DGV)ZNF561 [DGVbeta]
DECIPHERZNF561 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF561 
Mutations
ICGC Data PortalZNF561 
TCGA Data PortalZNF561 
Broad Tumor PortalZNF561
OASIS PortalZNF561 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF561  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF561
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF561
DgiDB (Drug Gene Interaction Database)ZNF561
DoCM (Curated mutations)ZNF561 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF561 (select a term)
intoGenZNF561
Cancer3DZNF561(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZNF561
Genetic Testing Registry ZNF561
NextProtQ8N587 [Medical]
TSGene93134
GENETestsZNF561
Target ValidationZNF561
Huge Navigator ZNF561 [HugePedia]
snp3D : Map Gene to Disease93134
BioCentury BCIQZNF561
ClinGenZNF561
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD93134
Chemical/Pharm GKB GenePA134935834
Clinical trialZNF561
Miscellaneous
canSAR (ICR)ZNF561 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF561
EVEXZNF561
GoPubMedZNF561
iHOPZNF561
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 31 15:50:44 CEST 2017

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