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ZNF562 (zinc finger protein 562)

Identity

Alias_symbol (synonym)FLJ20079
Other alias-
HGNC (Hugo) ZNF562
LocusID (NCBI) 54811
Atlas_Id 76240
Location 19p13.2  [Link to chromosome band 19p13]
Location_base_pair Starts at 9648662 and ends at 9675100 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF562   25950
Cards
Entrez_Gene (NCBI)ZNF562  54811  zinc finger protein 562
Aliases
GeneCards (Weizmann)ZNF562
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr19:9648662-9675100 [Contig_View]  ZNF562 [Vega]
TCGA cBioPortalZNF562
AceView (NCBI)ZNF562
Genatlas (Paris)ZNF562
WikiGenes54811
SOURCE (Princeton)ZNF562
Genetics Home Reference (NIH)ZNF562
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF562  -     chr19:9648662-9675100 -  19p13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF562  -     19p13.2   [Description]    (hg19-Feb_2009)
EnsemblZNF562 - 19p13.2 [CytoView hg19]  ZNF562 - 19p13.2 [CytoView hg38]
Mapping of homologs : NCBIZNF562 [Mapview hg19]  ZNF562 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI753280 AK000086 AK297446 AK300115 AK303038
RefSeq transcript (Entrez)NM_001130031 NM_001130032 NM_001300885 NM_017656
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF562
Cluster EST : UnigeneHs.371107 [ NCBI ]
CGAP (NCI)Hs.371107
Gene ExpressionZNF562 [ NCBI-GEO ]   ZNF562 [ EBI - ARRAY_EXPRESS ]   ZNF562 [ SEEK ]   ZNF562 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF562 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54811
GTEX Portal (Tissue expression)ZNF562
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6V9R5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6V9R5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6V9R5
Splice isoforms : SwissVarQ6V9R5
PhosPhoSitePlusQ6V9R5
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)    zf-C2H2 (PF00096)    zf-C2H2_6 (PF13912)   
Domain families : Pfam (NCBI)pfam01352    pfam00096    pfam13912   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF562
DMDM Disease mutations54811
Blocks (Seattle)ZNF562
SuperfamilyQ6V9R5
Peptide AtlasQ6V9R5
HPRD15844
IPIIPI00014874   IPI00655648   IPI01015512   IPI01015946   IPI01015223   
Protein Interaction databases
DIP (DOE-UCLA)Q6V9R5
IntAct (EBI)Q6V9R5
BioGRIDZNF562
STRING (EMBL)ZNF562
ZODIACZNF562
Ontologies - Pathways
QuickGOQ6V9R5
Ontology : AmiGODNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF562
Atlas of Cancer Signalling NetworkZNF562
Wikipedia pathwaysZNF562
Orthology - Evolution
OrthoDB54811
Phylogenetic Trees/Animal Genes : TreeFamZNF562
HOVERGENQ6V9R5
HOGENOMQ6V9R5
Homologs : HomoloGeneZNF562
Homology/Alignments : Family Browser (UCSC)ZNF562
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF562 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF562
dbVarZNF562
ClinVarZNF562
1000_GenomesZNF562 
Exome Variant ServerZNF562
ExAC (Exome Aggregation Consortium)ZNF562 (select the gene name)
Genetic variants : HAPMAP54811
Genomic Variants (DGV)ZNF562 [DGVbeta]
DECIPHERZNF562 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF562 
Mutations
ICGC Data PortalZNF562 
TCGA Data PortalZNF562 
Broad Tumor PortalZNF562
OASIS PortalZNF562 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF562  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF562
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF562
DgiDB (Drug Gene Interaction Database)ZNF562
DoCM (Curated mutations)ZNF562 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF562 (select a term)
intoGenZNF562
Cancer3DZNF562(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZNF562
Genetic Testing Registry ZNF562
NextProtQ6V9R5 [Medical]
TSGene54811
GENETestsZNF562
Target ValidationZNF562
Huge Navigator ZNF562 [HugePedia]
snp3D : Map Gene to Disease54811
BioCentury BCIQZNF562
ClinGenZNF562
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54811
Chemical/Pharm GKB GenePA134941707
Clinical trialZNF562
Miscellaneous
canSAR (ICR)ZNF562 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF562
EVEXZNF562
GoPubMedZNF562
iHOPZNF562
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:50:44 CEST 2017

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