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ZNF563 (zinc finger protein 563)

Identity

Alias_symbol (synonym)FLJ34797
Other alias-
HGNC (Hugo) ZNF563
LocusID (NCBI) 147837
Atlas_Id 76241
Location 19p13.2  [Link to chromosome band 19p13]
Location_base_pair Starts at 12317490 and ends at 12333720 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ZNF563 (19p13.2) / MICAL1 (6q21)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF563   30498
Cards
Entrez_Gene (NCBI)ZNF563  147837  zinc finger protein 563
Aliases
GeneCards (Weizmann)ZNF563
Ensembl hg19 (Hinxton)ENSG00000188868 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000188868 [Gene_View]  chr19:12317490-12333720 [Contig_View]  ZNF563 [Vega]
ICGC DataPortalENSG00000188868
TCGA cBioPortalZNF563
AceView (NCBI)ZNF563
Genatlas (Paris)ZNF563
WikiGenes147837
SOURCE (Princeton)ZNF563
Genetics Home Reference (NIH)ZNF563
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF563  -     chr19:12317490-12333720 -  19p13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF563  -     19p13.2   [Description]    (hg19-Feb_2009)
EnsemblZNF563 - 19p13.2 [CytoView hg19]  ZNF563 - 19p13.2 [CytoView hg38]
Mapping of homologs : NCBIZNF563 [Mapview hg19]  ZNF563 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK092116 AK313755 BC022523 DA687547 HQ447325
RefSeq transcript (Entrez)NM_145276
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF563
Cluster EST : UnigeneHs.663510 [ NCBI ]
CGAP (NCI)Hs.663510
Alternative Splicing GalleryENSG00000188868
Gene ExpressionZNF563 [ NCBI-GEO ]   ZNF563 [ EBI - ARRAY_EXPRESS ]   ZNF563 [ SEEK ]   ZNF563 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF563 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)147837
GTEX Portal (Tissue expression)ZNF563
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8TA94   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8TA94  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8TA94
Splice isoforms : SwissVarQ8TA94
PhosPhoSitePlusQ8TA94
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)    zf-C2H2 (PF00096)   
Domain families : Pfam (NCBI)pfam01352    pfam00096   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF563
DMDM Disease mutations147837
Blocks (Seattle)ZNF563
SuperfamilyQ8TA94
Human Protein AtlasENSG00000188868
Peptide AtlasQ8TA94
HPRD15845
IPIIPI00184499   IPI00179899   
Protein Interaction databases
DIP (DOE-UCLA)Q8TA94
IntAct (EBI)Q8TA94
FunCoupENSG00000188868
BioGRIDZNF563
STRING (EMBL)ZNF563
ZODIACZNF563
Ontologies - Pathways
QuickGOQ8TA94
Ontology : AmiGODNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF563
Atlas of Cancer Signalling NetworkZNF563
Wikipedia pathwaysZNF563
Orthology - Evolution
OrthoDB147837
GeneTree (enSembl)ENSG00000188868
Phylogenetic Trees/Animal Genes : TreeFamZNF563
HOVERGENQ8TA94
HOGENOMQ8TA94
Homologs : HomoloGeneZNF563
Homology/Alignments : Family Browser (UCSC)ZNF563
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF563 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF563
dbVarZNF563
ClinVarZNF563
1000_GenomesZNF563 
Exome Variant ServerZNF563
ExAC (Exome Aggregation Consortium)ZNF563 (select the gene name)
Genetic variants : HAPMAP147837
Genomic Variants (DGV)ZNF563 [DGVbeta]
DECIPHERZNF563 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF563 
Mutations
ICGC Data PortalZNF563 
TCGA Data PortalZNF563 
Broad Tumor PortalZNF563
OASIS PortalZNF563 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF563  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF563
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF563
DgiDB (Drug Gene Interaction Database)ZNF563
DoCM (Curated mutations)ZNF563 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF563 (select a term)
intoGenZNF563
Cancer3DZNF563(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZNF563
Genetic Testing Registry ZNF563
NextProtQ8TA94 [Medical]
TSGene147837
GENETestsZNF563
Target ValidationZNF563
Huge Navigator ZNF563 [HugePedia]
snp3D : Map Gene to Disease147837
BioCentury BCIQZNF563
ClinGenZNF563
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD147837
Chemical/Pharm GKB GenePA134949077
Clinical trialZNF563
Miscellaneous
canSAR (ICR)ZNF563 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF563
EVEXZNF563
GoPubMedZNF563
iHOPZNF563
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:44:57 CEST 2017

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