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ZNF564 (zinc finger protein 564)

Identity

Alias_symbol (synonym)MGC26914
Other alias-
HGNC (Hugo) ZNF564
LocusID (NCBI) 163050
Atlas_Id 76242
Location 19p13.2  [Link to chromosome band 19p13]
Location_base_pair Starts at 12525370 and ends at 12551542 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
GSK3A (19q13.2) / ZNF564 (19p13.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF564   31106
Cards
Entrez_Gene (NCBI)ZNF564  163050  zinc finger protein 564
Aliases
GeneCards (Weizmann)ZNF564
Ensembl hg19 (Hinxton)ENSG00000249709 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000249709 [Gene_View]  chr19:12525370-12551542 [Contig_View]  ZNF564 [Vega]
ICGC DataPortalENSG00000249709
TCGA cBioPortalZNF564
AceView (NCBI)ZNF564
Genatlas (Paris)ZNF564
WikiGenes163050
SOURCE (Princeton)ZNF564
Genetics Home Reference (NIH)ZNF564
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF564  -     chr19:12525370-12551542 -  19p13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF564  -     19p13.2   [Description]    (hg19-Feb_2009)
EnsemblZNF564 - 19p13.2 [CytoView hg19]  ZNF564 - 19p13.2 [CytoView hg38]
Mapping of homologs : NCBIZNF564 [Mapview hg19]  ZNF564 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK092760 AL834146 BC028367 BC065023 BC136728
RefSeq transcript (Entrez)NM_144976
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF564
Cluster EST : UnigeneHs.655615 [ NCBI ]
CGAP (NCI)Hs.655615
Alternative Splicing GalleryENSG00000249709
Gene ExpressionZNF564 [ NCBI-GEO ]   ZNF564 [ EBI - ARRAY_EXPRESS ]   ZNF564 [ SEEK ]   ZNF564 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF564 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)163050
GTEX Portal (Tissue expression)ZNF564
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8TBZ8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8TBZ8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8TBZ8
Splice isoforms : SwissVarQ8TBZ8
PhosPhoSitePlusQ8TBZ8
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)    zf-C2H2 (PF00096)    zf-C2H2_6 (PF13912)   
Domain families : Pfam (NCBI)pfam01352    pfam00096    pfam13912   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF564
DMDM Disease mutations163050
Blocks (Seattle)ZNF564
SuperfamilyQ8TBZ8
Human Protein AtlasENSG00000249709
Peptide AtlasQ8TBZ8
HPRD10338
IPIIPI00152327   IPI00925320   IPI00925112   
Protein Interaction databases
DIP (DOE-UCLA)Q8TBZ8
IntAct (EBI)Q8TBZ8
FunCoupENSG00000249709
BioGRIDZNF564
STRING (EMBL)ZNF564
ZODIACZNF564
Ontologies - Pathways
QuickGOQ8TBZ8
Ontology : AmiGOnegative regulation of transcription from RNA polymerase II promoter  transcription factor activity, sequence-specific DNA binding  protein binding  nucleus  transcription, DNA-templated  transcription regulatory region DNA binding  positive regulation of transcription from RNA polymerase II promoter  metal ion binding  
Ontology : EGO-EBInegative regulation of transcription from RNA polymerase II promoter  transcription factor activity, sequence-specific DNA binding  protein binding  nucleus  transcription, DNA-templated  transcription regulatory region DNA binding  positive regulation of transcription from RNA polymerase II promoter  metal ion binding  
NDEx NetworkZNF564
Atlas of Cancer Signalling NetworkZNF564
Wikipedia pathwaysZNF564
Orthology - Evolution
OrthoDB163050
GeneTree (enSembl)ENSG00000249709
Phylogenetic Trees/Animal Genes : TreeFamZNF564
HOVERGENQ8TBZ8
HOGENOMQ8TBZ8
Homologs : HomoloGeneZNF564
Homology/Alignments : Family Browser (UCSC)ZNF564
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF564 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF564
dbVarZNF564
ClinVarZNF564
1000_GenomesZNF564 
Exome Variant ServerZNF564
ExAC (Exome Aggregation Consortium)ZNF564 (select the gene name)
Genetic variants : HAPMAP163050
Genomic Variants (DGV)ZNF564 [DGVbeta]
DECIPHERZNF564 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF564 
Mutations
ICGC Data PortalZNF564 
TCGA Data PortalZNF564 
Broad Tumor PortalZNF564
OASIS PortalZNF564 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF564  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF564
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF564
DgiDB (Drug Gene Interaction Database)ZNF564
DoCM (Curated mutations)ZNF564 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF564 (select a term)
intoGenZNF564
Cancer3DZNF564(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZNF564
Genetic Testing Registry ZNF564
NextProtQ8TBZ8 [Medical]
TSGene163050
GENETestsZNF564
Target ValidationZNF564
Huge Navigator ZNF564 [HugePedia]
snp3D : Map Gene to Disease163050
BioCentury BCIQZNF564
ClinGenZNF564
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD163050
Chemical/Pharm GKB GenePA134876070
Clinical trialZNF564
Miscellaneous
canSAR (ICR)ZNF564 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF564
EVEXZNF564
GoPubMedZNF564
iHOPZNF564
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:50:45 CEST 2017

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