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ZNF565 (zinc finger protein 565)

Identity

Alias_symbol (synonym)FLJ36991
Other alias-
HGNC (Hugo) ZNF565
LocusID (NCBI) 147929
Atlas_Id 76243
Location 19q13.12  [Link to chromosome band 19q13]
Location_base_pair Starts at 36182060 and ends at 36215084 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
AXL (19q13.2) / ZNF565 (19q13.12)PARG (10q11.23) / ZNF565 (19q13.12)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF565   26726
Cards
Entrez_Gene (NCBI)ZNF565  147929  zinc finger protein 565
Aliases
GeneCards (Weizmann)ZNF565
Ensembl hg19 (Hinxton)ENSG00000196357 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000196357 [Gene_View]  chr19:36182060-36215084 [Contig_View]  ZNF565 [Vega]
ICGC DataPortalENSG00000196357
TCGA cBioPortalZNF565
AceView (NCBI)ZNF565
Genatlas (Paris)ZNF565
WikiGenes147929
SOURCE (Princeton)ZNF565
Genetics Home Reference (NIH)ZNF565
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF565  -     chr19:36182060-36215084 -  19q13.12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF565  -     19q13.12   [Description]    (hg19-Feb_2009)
EnsemblZNF565 - 19q13.12 [CytoView hg19]  ZNF565 - 19q13.12 [CytoView hg38]
Mapping of homologs : NCBIZNF565 [Mapview hg19]  ZNF565 [Mapview hg38]
OMIM614275   
Gene and transcription
Genbank (Entrez)AA476586 AK057290 AK094310 AK308212 BC068453
RefSeq transcript (Entrez)NM_001042474 NM_152477
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF565
Cluster EST : UnigeneHs.596338 [ NCBI ]
CGAP (NCI)Hs.596338
Alternative Splicing GalleryENSG00000196357
Gene ExpressionZNF565 [ NCBI-GEO ]   ZNF565 [ EBI - ARRAY_EXPRESS ]   ZNF565 [ SEEK ]   ZNF565 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF565 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)147929
GTEX Portal (Tissue expression)ZNF565
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N9K5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N9K5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N9K5
Splice isoforms : SwissVarQ8N9K5
PhosPhoSitePlusQ8N9K5
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)    zf-C2H2 (PF00096)   
Domain families : Pfam (NCBI)pfam01352    pfam00096   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF565
DMDM Disease mutations147929
Blocks (Seattle)ZNF565
SuperfamilyQ8N9K5
Human Protein AtlasENSG00000196357
Peptide AtlasQ8N9K5
HPRD15846
IPIIPI00396028   IPI00479180   
Protein Interaction databases
DIP (DOE-UCLA)Q8N9K5
IntAct (EBI)Q8N9K5
FunCoupENSG00000196357
BioGRIDZNF565
STRING (EMBL)ZNF565
ZODIACZNF565
Ontologies - Pathways
QuickGOQ8N9K5
Ontology : AmiGODNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF565
Atlas of Cancer Signalling NetworkZNF565
Wikipedia pathwaysZNF565
Orthology - Evolution
OrthoDB147929
GeneTree (enSembl)ENSG00000196357
Phylogenetic Trees/Animal Genes : TreeFamZNF565
HOVERGENQ8N9K5
HOGENOMQ8N9K5
Homologs : HomoloGeneZNF565
Homology/Alignments : Family Browser (UCSC)ZNF565
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF565 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF565
dbVarZNF565
ClinVarZNF565
1000_GenomesZNF565 
Exome Variant ServerZNF565
ExAC (Exome Aggregation Consortium)ZNF565 (select the gene name)
Genetic variants : HAPMAP147929
Genomic Variants (DGV)ZNF565 [DGVbeta]
DECIPHERZNF565 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF565 
Mutations
ICGC Data PortalZNF565 
TCGA Data PortalZNF565 
Broad Tumor PortalZNF565
OASIS PortalZNF565 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF565  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF565
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF565
DgiDB (Drug Gene Interaction Database)ZNF565
DoCM (Curated mutations)ZNF565 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF565 (select a term)
intoGenZNF565
Cancer3DZNF565(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614275   
Orphanet
MedgenZNF565
Genetic Testing Registry ZNF565
NextProtQ8N9K5 [Medical]
TSGene147929
GENETestsZNF565
Target ValidationZNF565
Huge Navigator ZNF565 [HugePedia]
snp3D : Map Gene to Disease147929
BioCentury BCIQZNF565
ClinGenZNF565
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD147929
Chemical/Pharm GKB GenePA134970652
Clinical trialZNF565
Miscellaneous
canSAR (ICR)ZNF565 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF565
EVEXZNF565
GoPubMedZNF565
iHOPZNF565
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:50:45 CEST 2017

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