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ZNF566 (zinc finger protein 566)

Identity

Alias_symbol (synonym)FLJ14779
MGC12515
Other alias-
HGNC (Hugo) ZNF566
LocusID (NCBI) 84924
Atlas_Id 76244
Location 19q13.12  [Link to chromosome band 19q13]
Location_base_pair Starts at 36445119 and ends at 36489561 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ZNF566 (19q13.12) / EFTUD2 (17q21.31)ZNF566 (19q13.12) / NFIA (1p31.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF566   25919
Cards
Entrez_Gene (NCBI)ZNF566  84924  zinc finger protein 566
Aliases
GeneCards (Weizmann)ZNF566
Ensembl hg19 (Hinxton)ENSG00000186017 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000186017 [Gene_View]  chr19:36445119-36489561 [Contig_View]  ZNF566 [Vega]
ICGC DataPortalENSG00000186017
TCGA cBioPortalZNF566
AceView (NCBI)ZNF566
Genatlas (Paris)ZNF566
WikiGenes84924
SOURCE (Princeton)ZNF566
Genetics Home Reference (NIH)ZNF566
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF566  -     chr19:36445119-36489561 -  19q13.12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF566  -     19q13.12   [Description]    (hg19-Feb_2009)
EnsemblZNF566 - 19q13.12 [CytoView hg19]  ZNF566 - 19q13.12 [CytoView hg38]
Mapping of homologs : NCBIZNF566 [Mapview hg19]  ZNF566 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK027685 AK074497 AK299393 AK316262 BC007064
RefSeq transcript (Entrez)NM_001145343 NM_001145344 NM_001145345 NM_001300970 NM_032838
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF566
Cluster EST : UnigeneHs.533939 [ NCBI ]
CGAP (NCI)Hs.533939
Alternative Splicing GalleryENSG00000186017
Gene ExpressionZNF566 [ NCBI-GEO ]   ZNF566 [ EBI - ARRAY_EXPRESS ]   ZNF566 [ SEEK ]   ZNF566 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF566 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84924
GTEX Portal (Tissue expression)ZNF566
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ969W8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ969W8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ969W8
Splice isoforms : SwissVarQ969W8
PhosPhoSitePlusQ969W8
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)    zf-C2H2 (PF00096)    zf-C2H2_6 (PF13912)   
Domain families : Pfam (NCBI)pfam01352    pfam00096    pfam13912   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF566
DMDM Disease mutations84924
Blocks (Seattle)ZNF566
SuperfamilyQ969W8
Human Protein AtlasENSG00000186017
Peptide AtlasQ969W8
HPRD15847
IPIIPI00396149   IPI00790760   IPI00926131   IPI00925879   
Protein Interaction databases
DIP (DOE-UCLA)Q969W8
IntAct (EBI)Q969W8
FunCoupENSG00000186017
BioGRIDZNF566
STRING (EMBL)ZNF566
ZODIACZNF566
Ontologies - Pathways
QuickGOQ969W8
Ontology : AmiGODNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF566
Atlas of Cancer Signalling NetworkZNF566
Wikipedia pathwaysZNF566
Orthology - Evolution
OrthoDB84924
GeneTree (enSembl)ENSG00000186017
Phylogenetic Trees/Animal Genes : TreeFamZNF566
HOVERGENQ969W8
HOGENOMQ969W8
Homologs : HomoloGeneZNF566
Homology/Alignments : Family Browser (UCSC)ZNF566
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF566 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF566
dbVarZNF566
ClinVarZNF566
1000_GenomesZNF566 
Exome Variant ServerZNF566
ExAC (Exome Aggregation Consortium)ZNF566 (select the gene name)
Genetic variants : HAPMAP84924
Genomic Variants (DGV)ZNF566 [DGVbeta]
DECIPHERZNF566 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF566 
Mutations
ICGC Data PortalZNF566 
TCGA Data PortalZNF566 
Broad Tumor PortalZNF566
OASIS PortalZNF566 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF566  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF566
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF566
DgiDB (Drug Gene Interaction Database)ZNF566
DoCM (Curated mutations)ZNF566 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF566 (select a term)
intoGenZNF566
Cancer3DZNF566(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZNF566
Genetic Testing Registry ZNF566
NextProtQ969W8 [Medical]
TSGene84924
GENETestsZNF566
Target ValidationZNF566
Huge Navigator ZNF566 [HugePedia]
snp3D : Map Gene to Disease84924
BioCentury BCIQZNF566
ClinGenZNF566
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84924
Chemical/Pharm GKB GenePA134977695
Clinical trialZNF566
Miscellaneous
canSAR (ICR)ZNF566 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF566
EVEXZNF566
GoPubMedZNF566
iHOPZNF566
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:50:45 CEST 2017

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