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ZNF567 (zinc finger protein 567)

Identity

Alias_symbol (synonym)MGC45586
Other alias-
HGNC (Hugo) ZNF567
LocusID (NCBI) 163081
Atlas_Id 76245
Location 19q13.12  [Link to chromosome band 19q13]
Location_base_pair Starts at 36687612 and ends at 36721336 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF567   28696
Cards
Entrez_Gene (NCBI)ZNF567  163081  zinc finger protein 567
Aliases
GeneCards (Weizmann)ZNF567
Ensembl hg19 (Hinxton)ENSG00000189042 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000189042 [Gene_View]  chr19:36687612-36721336 [Contig_View]  ZNF567 [Vega]
ICGC DataPortalENSG00000189042
TCGA cBioPortalZNF567
AceView (NCBI)ZNF567
Genatlas (Paris)ZNF567
WikiGenes163081
SOURCE (Princeton)ZNF567
Genetics Home Reference (NIH)ZNF567
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF567  -     chr19:36687612-36721336 +  19q13.12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF567  -     19q13.12   [Description]    (hg19-Feb_2009)
EnsemblZNF567 - 19q13.12 [CytoView hg19]  ZNF567 - 19q13.12 [CytoView hg38]
Mapping of homologs : NCBIZNF567 [Mapview hg19]  ZNF567 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA742659 AK024149 AK093034 AK126691 AK298556
RefSeq transcript (Entrez)NM_001300979 NM_001322911 NM_001322912 NM_001322913 NM_001322914 NM_001322915 NM_001322916 NM_001322917 NM_001322918 NM_001322919 NM_001322920 NM_152603
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF567
Cluster EST : UnigeneHs.714002 [ NCBI ]
CGAP (NCI)Hs.714002
Alternative Splicing GalleryENSG00000189042
Gene ExpressionZNF567 [ NCBI-GEO ]   ZNF567 [ EBI - ARRAY_EXPRESS ]   ZNF567 [ SEEK ]   ZNF567 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF567 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)163081
GTEX Portal (Tissue expression)ZNF567
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N184   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N184  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N184
Splice isoforms : SwissVarQ8N184
PhosPhoSitePlusQ8N184
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)    zf-C2H2 (PF00096)    zf-C2H2_6 (PF13912)   
Domain families : Pfam (NCBI)pfam01352    pfam00096    pfam13912   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF567
DMDM Disease mutations163081
Blocks (Seattle)ZNF567
SuperfamilyQ8N184
Human Protein AtlasENSG00000189042
Peptide AtlasQ8N184
HPRD11728
IPIIPI00640322   IPI00655542   IPI00847438   IPI00909667   IPI01018094   
Protein Interaction databases
DIP (DOE-UCLA)Q8N184
IntAct (EBI)Q8N184
FunCoupENSG00000189042
BioGRIDZNF567
STRING (EMBL)ZNF567
ZODIACZNF567
Ontologies - Pathways
QuickGOQ8N184
Ontology : AmiGOnegative regulation of transcription from RNA polymerase II promoter  transcription factor activity, sequence-specific DNA binding  protein binding  nucleus  transcription, DNA-templated  transcription regulatory region DNA binding  positive regulation of transcription from RNA polymerase II promoter  metal ion binding  
Ontology : EGO-EBInegative regulation of transcription from RNA polymerase II promoter  transcription factor activity, sequence-specific DNA binding  protein binding  nucleus  transcription, DNA-templated  transcription regulatory region DNA binding  positive regulation of transcription from RNA polymerase II promoter  metal ion binding  
NDEx NetworkZNF567
Atlas of Cancer Signalling NetworkZNF567
Wikipedia pathwaysZNF567
Orthology - Evolution
OrthoDB163081
GeneTree (enSembl)ENSG00000189042
Phylogenetic Trees/Animal Genes : TreeFamZNF567
HOVERGENQ8N184
HOGENOMQ8N184
Homologs : HomoloGeneZNF567
Homology/Alignments : Family Browser (UCSC)ZNF567
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF567 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF567
dbVarZNF567
ClinVarZNF567
1000_GenomesZNF567 
Exome Variant ServerZNF567
ExAC (Exome Aggregation Consortium)ZNF567 (select the gene name)
Genetic variants : HAPMAP163081
Genomic Variants (DGV)ZNF567 [DGVbeta]
DECIPHERZNF567 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF567 
Mutations
ICGC Data PortalZNF567 
TCGA Data PortalZNF567 
Broad Tumor PortalZNF567
OASIS PortalZNF567 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF567  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF567
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF567
DgiDB (Drug Gene Interaction Database)ZNF567
DoCM (Curated mutations)ZNF567 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF567 (select a term)
intoGenZNF567
Cancer3DZNF567(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZNF567
Genetic Testing Registry ZNF567
NextProtQ8N184 [Medical]
TSGene163081
GENETestsZNF567
Target ValidationZNF567
Huge Navigator ZNF567 [HugePedia]
snp3D : Map Gene to Disease163081
BioCentury BCIQZNF567
ClinGenZNF567
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD163081
Chemical/Pharm GKB GenePA134986394
Clinical trialZNF567
Miscellaneous
canSAR (ICR)ZNF567 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF567
EVEXZNF567
GoPubMedZNF567
iHOPZNF567
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:50:46 CEST 2017

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