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ZNF568 (zinc finger protein 568)

>Strong>Identity

Alias_symbol (synonym)DKFZp686B0797
Other alias-
HGNC (Hugo) ZNF568
LocusID (NCBI) 374900
Atlas_Id 76246
Location 19q13.12  [Link to chromosome band 19q13]
Location_base_pair Starts at 36916329 and ends at 36952743 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF568   25392
Cards
Entrez_Gene (NCBI)ZNF568  374900  zinc finger protein 568
Aliases
GeneCards (Weizmann)ZNF568
Ensembl hg19 (Hinxton)ENSG00000198453 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000198453 [Gene_View]  chr19:36916329-36952743 [Contig_View]  ZNF568 [Vega]
ICGC DataPortalENSG00000198453
TCGA cBioPortalZNF568
AceView (NCBI)ZNF568
Genatlas (Paris)ZNF568
WikiGenes374900
SOURCE (Princeton)ZNF568
Genetics Home Reference (NIH)ZNF568
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF568  -     chr19:36916329-36952743 +  19q13.12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF568  -     19q13.12   [Description]    (hg19-Feb_2009)
EnsemblZNF568 - 19q13.12 [CytoView hg19]  ZNF568 - 19q13.12 [CytoView hg38]
Mapping of homologs : NCBIZNF568 [Mapview hg19]  ZNF568 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK093123 AK095559 AK299626 BC016334 BC031218
RefSeq transcript (Entrez)NM_001204835 NM_001204836 NM_001204837 NM_001204838 NM_001204839 NM_198539
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF568
Cluster EST : UnigeneHs.733385 [ NCBI ]
CGAP (NCI)Hs.733385
Alternative Splicing GalleryENSG00000198453
Gene ExpressionZNF568 [ NCBI-GEO ]   ZNF568 [ EBI - ARRAY_EXPRESS ]   ZNF568 [ SEEK ]   ZNF568 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF568 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)374900
GTEX Portal (Tissue expression)ZNF568
Human Protein AtlasENSG00000198453-ZNF568 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ3ZCX4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ3ZCX4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ3ZCX4
Splice isoforms : SwissVarQ3ZCX4
PhosPhoSitePlusQ3ZCX4
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)    zf-C2H2 (PF00096)    zf-C2H2_6 (PF13912)   
Domain families : Pfam (NCBI)pfam01352    pfam00096    pfam13912   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF568
DMDM Disease mutations374900
Blocks (Seattle)ZNF568
SuperfamilyQ3ZCX4
Human Protein Atlas [tissue]ENSG00000198453-ZNF568 [tissue]
Peptide AtlasQ3ZCX4
HPRD15848
IPIIPI00646478   IPI00373939   IPI00816041   IPI01018089   IPI00643050   IPI00926783   IPI00927258   IPI00924681   
Protein Interaction databases
DIP (DOE-UCLA)Q3ZCX4
IntAct (EBI)Q3ZCX4
FunCoupENSG00000198453
BioGRIDZNF568
STRING (EMBL)ZNF568
ZODIACZNF568
Ontologies - Pathways
QuickGOQ3ZCX4
Ontology : AmiGODNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  multicellular organism development  metal ion binding  
Ontology : EGO-EBIDNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  multicellular organism development  metal ion binding  
NDEx NetworkZNF568
Atlas of Cancer Signalling NetworkZNF568
Wikipedia pathwaysZNF568
Orthology - Evolution
OrthoDB374900
GeneTree (enSembl)ENSG00000198453
Phylogenetic Trees/Animal Genes : TreeFamZNF568
HOVERGENQ3ZCX4
HOGENOMQ3ZCX4
Homologs : HomoloGeneZNF568
Homology/Alignments : Family Browser (UCSC)ZNF568
Gene fusions - Rearrangements
Fusion: Tumor Portal ZNF568
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF568 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF568
dbVarZNF568
ClinVarZNF568
1000_GenomesZNF568 
Exome Variant ServerZNF568
ExAC (Exome Aggregation Consortium)ENSG00000198453
GNOMAD BrowserENSG00000198453
Genetic variants : HAPMAP374900
Genomic Variants (DGV)ZNF568 [DGVbeta]
DECIPHERZNF568 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF568 
Mutations
ICGC Data PortalZNF568 
TCGA Data PortalZNF568 
Broad Tumor PortalZNF568
OASIS PortalZNF568 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF568  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF568
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF568
DgiDB (Drug Gene Interaction Database)ZNF568
DoCM (Curated mutations)ZNF568 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF568 (select a term)
intoGenZNF568
Cancer3DZNF568(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZNF568
Genetic Testing Registry ZNF568
NextProtQ3ZCX4 [Medical]
TSGene374900
GENETestsZNF568
Target ValidationZNF568
Huge Navigator ZNF568 [HugePedia]
snp3D : Map Gene to Disease374900
BioCentury BCIQZNF568
ClinGenZNF568
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD374900
Chemical/Pharm GKB GenePA134893477
Clinical trialZNF568
Miscellaneous
canSAR (ICR)ZNF568 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF568
EVEXZNF568
GoPubMedZNF568
iHOPZNF568
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 12:37:25 CET 2017

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