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ZNF569 (zinc finger protein 569)

Identity

Alias (NCBI)ZAP1
ZNF
Zfp74
HGNC (Hugo) ZNF569
HGNC Alias symbFLJ32053
ZAP1
LocusID (NCBI) 148266
Atlas_Id 76247
Location 19q13.12  [Link to chromosome band 19q13]
Location_base_pair Starts at 37411158 and ends at 37467444 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CD63 (12q13.2) / ZNF569 (19q13.12)HNRNPF (10q11.21) / ZNF569 (19q13.12)ZNF569 (19q13.12) / IZUMO2 (19q13.33)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)ZNF569   24737
Cards
Entrez_Gene (NCBI)ZNF569    zinc finger protein 569
AliasesZAP1; ZNF; Zfp74
GeneCards (Weizmann)ZNF569
Ensembl hg19 (Hinxton)ENSG00000196437 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000196437 [Gene_View]  ENSG00000196437 [Sequence]  chr19:37411158-37467444 [Contig_View]  ZNF569 [Vega]
ICGC DataPortalENSG00000196437
TCGA cBioPortalZNF569
AceView (NCBI)ZNF569
Genatlas (Paris)ZNF569
SOURCE (Princeton)ZNF569
Genetics Home Reference (NIH)ZNF569
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF569  -     chr19:37411158-37467444 -  19q13.12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF569  -     19q13.12   [Description]    (hg19-Feb_2009)
GoldenPathZNF569 - 19q13.12 [CytoView hg19]  ZNF569 - 19q13.12 [CytoView hg38]
ImmunoBaseENSG00000196437
Genome Data Viewer NCBIZNF569 [Mapview hg19]  
OMIM613904   
Gene and transcription
Genbank (Entrez)AK056615 AK122846 AK289987 AL833408 AY835704
RefSeq transcript (Entrez)NM_001330482 NM_152484
Consensus coding sequences : CCDS (NCBI)ZNF569
Gene ExpressionZNF569 [ NCBI-GEO ]   ZNF569 [ EBI - ARRAY_EXPRESS ]   ZNF569 [ SEEK ]   ZNF569 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF569 [ Firebrowse - Broad ]
GenevisibleExpression of ZNF569 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)148266
GTEX Portal (Tissue expression)ZNF569
Human Protein AtlasENSG00000196437-ZNF569 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5MCW4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5MCW4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5MCW4
PhosPhoSitePlusQ5MCW4
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    KRAB_dom_sf    Znf_C2H2_sf    Znf_C2H2_type   
Domain families : Pfam (Sanger)KRAB (PF01352)    zf-C2H2 (PF00096)   
Domain families : Pfam (NCBI)pfam01352    pfam00096   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF569
SuperfamilyQ5MCW4
AlphaFold pdb e-kbQ5MCW4   
Human Protein Atlas [tissue]ENSG00000196437-ZNF569 [tissue]
HPRD15849
Protein Interaction databases
DIP (DOE-UCLA)Q5MCW4
IntAct (EBI)Q5MCW4
BioGRIDZNF569
STRING (EMBL)ZNF569
ZODIACZNF569
Ontologies - Pathways
QuickGOQ5MCW4
Ontology : AmiGORNA polymerase II cis-regulatory region sequence-specific DNA binding  DNA-binding transcription factor activity, RNA polymerase II-specific  protein binding  nucleus  regulation of transcription by RNA polymerase II  metal ion binding  
Ontology : EGO-EBIRNA polymerase II cis-regulatory region sequence-specific DNA binding  DNA-binding transcription factor activity, RNA polymerase II-specific  protein binding  nucleus  regulation of transcription by RNA polymerase II  metal ion binding  
NDEx NetworkZNF569
Atlas of Cancer Signalling NetworkZNF569
Wikipedia pathwaysZNF569
Orthology - Evolution
OrthoDB148266
GeneTree (enSembl)ENSG00000196437
Phylogenetic Trees/Animal Genes : TreeFamZNF569
Homologs : HomoloGeneZNF569
Homology/Alignments : Family Browser (UCSC)ZNF569
Gene fusions - Rearrangements
Fusion : QuiverZNF569
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF569 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF569
dbVarZNF569
ClinVarZNF569
MonarchZNF569
1000_GenomesZNF569 
Exome Variant ServerZNF569
GNOMAD BrowserENSG00000196437
Varsome BrowserZNF569
ACMGZNF569 variants
VarityQ5MCW4
Genomic Variants (DGV)ZNF569 [DGVbeta]
DECIPHERZNF569 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF569 
Mutations
ICGC Data PortalZNF569 
TCGA Data PortalZNF569 
Broad Tumor PortalZNF569
OASIS PortalZNF569 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF569  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DZNF569
Mutations and Diseases : HGMDZNF569
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaZNF569
DgiDB (Drug Gene Interaction Database)ZNF569
DoCM (Curated mutations)ZNF569
CIViC (Clinical Interpretations of Variants in Cancer)ZNF569
Cancer3DZNF569
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613904   
Orphanet
DisGeNETZNF569
MedgenZNF569
Genetic Testing Registry ZNF569
NextProtQ5MCW4 [Medical]
GENETestsZNF569
Target ValidationZNF569
Huge Navigator ZNF569 [HugePedia]
ClinGenZNF569
Clinical trials, drugs, therapy
MyCancerGenomeZNF569
Protein Interactions : CTDZNF569
Pharm GKB GenePA134899564
PharosQ5MCW4
Clinical trialZNF569
Miscellaneous
canSAR (ICR)ZNF569
HarmonizomeZNF569
DataMed IndexZNF569
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXZNF569
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:30:00 CEST 2021

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