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ZNF569 (zinc finger protein 569)

Identity

Alias_symbol (synonym)FLJ32053
ZAP1
Other aliasZNF
HGNC (Hugo) ZNF569
LocusID (NCBI) 148266
Atlas_Id 76247
Location 19q13.12  [Link to chromosome band 19q13]
Location_base_pair Starts at 37902060 and ends at 37958339 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
CD63 (12q13.2) / ZNF569 (19q13.12)HNRNPF (10q11.21) / ZNF569 (19q13.12)ZNF569 (19q13.12) / IZUMO2 (19q13.33)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF569   24737
Cards
Entrez_Gene (NCBI)ZNF569  148266  zinc finger protein 569
AliasesZAP1; ZNF
GeneCards (Weizmann)ZNF569
Ensembl hg19 (Hinxton)ENSG00000196437 [Gene_View]  chr19:37902060-37958339 [Contig_View]  ZNF569 [Vega]
Ensembl hg38 (Hinxton)ENSG00000196437 [Gene_View]  chr19:37902060-37958339 [Contig_View]  ZNF569 [Vega]
ICGC DataPortalENSG00000196437
TCGA cBioPortalZNF569
AceView (NCBI)ZNF569
Genatlas (Paris)ZNF569
WikiGenes148266
SOURCE (Princeton)ZNF569
Genetics Home Reference (NIH)ZNF569
Genomic and cartography
GoldenPath hg19 (UCSC)ZNF569  -     chr19:37902060-37958339 -  19q13.12   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ZNF569  -     19q13.12   [Description]    (hg38-Dec_2013)
EnsemblZNF569 - 19q13.12 [CytoView hg19]  ZNF569 - 19q13.12 [CytoView hg38]
Mapping of homologs : NCBIZNF569 [Mapview hg19]  ZNF569 [Mapview hg38]
OMIM613904   
Gene and transcription
Genbank (Entrez)AK056615 AK122846 AK289987 AL833408 AY835704
RefSeq transcript (Entrez)NM_152484
RefSeq genomic (Entrez)NC_000019 NC_018930 NT_011109 NW_004929415
Consensus coding sequences : CCDS (NCBI)ZNF569
Cluster EST : UnigeneHs.511848 [ NCBI ]
CGAP (NCI)Hs.511848
Alternative Splicing GalleryENSG00000196437
Gene ExpressionZNF569 [ NCBI-GEO ]   ZNF569 [ EBI - ARRAY_EXPRESS ]   ZNF569 [ SEEK ]   ZNF569 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF569 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)148266
GTEX Portal (Tissue expression)ZNF569
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5MCW4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5MCW4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5MCW4
Splice isoforms : SwissVarQ5MCW4
PhosPhoSitePlusQ5MCW4
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Krueppel-associated_box    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)   
Domain families : Pfam (NCBI)pfam01352   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF569
DMDM Disease mutations148266
Blocks (Seattle)ZNF569
SuperfamilyQ5MCW4
Human Protein AtlasENSG00000196437
Peptide AtlasQ5MCW4
HPRD15849
IPIIPI00394985   IPI00797317   
Protein Interaction databases
DIP (DOE-UCLA)Q5MCW4
IntAct (EBI)Q5MCW4
FunCoupENSG00000196437
BioGRIDZNF569
STRING (EMBL)ZNF569
ZODIACZNF569
Ontologies - Pathways
QuickGOQ5MCW4
Ontology : AmiGODNA binding  protein binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  protein binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF569
Atlas of Cancer Signalling NetworkZNF569
Wikipedia pathwaysZNF569
Orthology - Evolution
OrthoDB148266
GeneTree (enSembl)ENSG00000196437
Phylogenetic Trees/Animal Genes : TreeFamZNF569
HOVERGENQ5MCW4
HOGENOMQ5MCW4
Homologs : HomoloGeneZNF569
Homology/Alignments : Family Browser (UCSC)ZNF569
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF569 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF569
dbVarZNF569
ClinVarZNF569
1000_GenomesZNF569 
Exome Variant ServerZNF569
ExAC (Exome Aggregation Consortium)ZNF569 (select the gene name)
Genetic variants : HAPMAP148266
Genomic Variants (DGV)ZNF569 [DGVbeta]
DECIPHER (Syndromes)19:37902060-37958339  ENSG00000196437
CONAN: Copy Number AnalysisZNF569 
Mutations
ICGC Data PortalZNF569 
TCGA Data PortalZNF569 
Broad Tumor PortalZNF569
OASIS PortalZNF569 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF569  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF569
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF569
DgiDB (Drug Gene Interaction Database)ZNF569
DoCM (Curated mutations)ZNF569 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF569 (select a term)
intoGenZNF569
Cancer3DZNF569(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613904   
Orphanet
MedgenZNF569
Genetic Testing Registry ZNF569
NextProtQ5MCW4 [Medical]
TSGene148266
GENETestsZNF569
Huge Navigator ZNF569 [HugePedia]
snp3D : Map Gene to Disease148266
BioCentury BCIQZNF569
ClinGenZNF569
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD148266
Chemical/Pharm GKB GenePA134899564
Clinical trialZNF569
Miscellaneous
canSAR (ICR)ZNF569 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF569
EVEXZNF569
GoPubMedZNF569
iHOPZNF569
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:53:22 CET 2017

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