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ZNF57 (zinc finger protein 57)

Identity

Alias_namesZNF424
zinc finger protein 424
Other alias
HGNC (Hugo) ZNF57
LocusID (NCBI) 126295
Atlas_Id 76248
Location 19p13.3  [Link to chromosome band 19p13]
Location_base_pair Starts at 2907108 and ends at 2918476 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF57   13125
Cards
Entrez_Gene (NCBI)ZNF57  126295  zinc finger protein 57
AliasesZNF424
GeneCards (Weizmann)ZNF57
Ensembl hg19 (Hinxton)ENSG00000171970 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000171970 [Gene_View]  chr19:2907108-2918476 [Contig_View]  ZNF57 [Vega]
ICGC DataPortalENSG00000171970
TCGA cBioPortalZNF57
AceView (NCBI)ZNF57
Genatlas (Paris)ZNF57
WikiGenes126295
SOURCE (Princeton)ZNF57
Genetics Home Reference (NIH)ZNF57
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF57  -     chr19:2907108-2918476 +  19p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF57  -     19p13.3   [Description]    (hg19-Feb_2009)
EnsemblZNF57 - 19p13.3 [CytoView hg19]  ZNF57 - 19p13.3 [CytoView hg38]
Mapping of homologs : NCBIZNF57 [Mapview hg19]  ZNF57 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK302165 AK314848 BC028974 BX537601 EF534355
RefSeq transcript (Entrez)NM_001319083 NM_173480
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF57
Cluster EST : UnigeneHs.591378 [ NCBI ]
CGAP (NCI)Hs.591378
Alternative Splicing GalleryENSG00000171970
Gene ExpressionZNF57 [ NCBI-GEO ]   ZNF57 [ EBI - ARRAY_EXPRESS ]   ZNF57 [ SEEK ]   ZNF57 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF57 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)126295
GTEX Portal (Tissue expression)ZNF57
Human Protein AtlasENSG00000171970-ZNF57 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ68EA5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ68EA5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ68EA5
Splice isoforms : SwissVarQ68EA5
PhosPhoSitePlusQ68EA5
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)    zf-C2H2 (PF00096)   
Domain families : Pfam (NCBI)pfam01352    pfam00096   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF57
DMDM Disease mutations126295
Blocks (Seattle)ZNF57
SuperfamilyQ68EA5
Human Protein Atlas [tissue]ENSG00000171970-ZNF57 [tissue]
Peptide AtlasQ68EA5
HPRD14034
IPIIPI00643088   IPI00873938   IPI00816566   IPI00977765   IPI00975771   
Protein Interaction databases
DIP (DOE-UCLA)Q68EA5
IntAct (EBI)Q68EA5
FunCoupENSG00000171970
BioGRIDZNF57
STRING (EMBL)ZNF57
ZODIACZNF57
Ontologies - Pathways
QuickGOQ68EA5
Ontology : AmiGODNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF57
Atlas of Cancer Signalling NetworkZNF57
Wikipedia pathwaysZNF57
Orthology - Evolution
OrthoDB126295
GeneTree (enSembl)ENSG00000171970
Phylogenetic Trees/Animal Genes : TreeFamZNF57
HOVERGENQ68EA5
HOGENOMQ68EA5
Homologs : HomoloGeneZNF57
Homology/Alignments : Family Browser (UCSC)ZNF57
Gene fusions - Rearrangements
Fusion: Tumor Portal ZNF57
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF57 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF57
dbVarZNF57
ClinVarZNF57
1000_GenomesZNF57 
Exome Variant ServerZNF57
ExAC (Exome Aggregation Consortium)ENSG00000171970
GNOMAD BrowserENSG00000171970
Genetic variants : HAPMAP126295
Genomic Variants (DGV)ZNF57 [DGVbeta]
DECIPHERZNF57 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF57 
Mutations
ICGC Data PortalZNF57 
TCGA Data PortalZNF57 
Broad Tumor PortalZNF57
OASIS PortalZNF57 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF57  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF57
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF57
DgiDB (Drug Gene Interaction Database)ZNF57
DoCM (Curated mutations)ZNF57 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF57 (select a term)
intoGenZNF57
Cancer3DZNF57(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZNF57
Genetic Testing Registry ZNF57
NextProtQ68EA5 [Medical]
TSGene126295
GENETestsZNF57
Target ValidationZNF57
Huge Navigator ZNF57 [HugePedia]
snp3D : Map Gene to Disease126295
BioCentury BCIQZNF57
ClinGenZNF57
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD126295
Chemical/Pharm GKB GenePA37699
Clinical trialZNF57
Miscellaneous
canSAR (ICR)ZNF57 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF57
EVEXZNF57
GoPubMedZNF57
iHOPZNF57
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 12:37:25 CET 2017

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