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ZNF570 (zinc finger protein 570)

Identity

Alias_symbol (synonym)FLJ30791
Other alias-
HGNC (Hugo) ZNF570
LocusID (NCBI) 148268
Atlas_Id 76249
Location 19q13.12  [Link to chromosome band 19q13]
Location_base_pair Starts at 37467772 and ends at 37488652 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF570   26416
Cards
Entrez_Gene (NCBI)ZNF570  148268  zinc finger protein 570
Aliases
GeneCards (Weizmann)ZNF570
Ensembl hg19 (Hinxton)ENSG00000171827 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000171827 [Gene_View]  chr19:37467772-37488652 [Contig_View]  ZNF570 [Vega]
ICGC DataPortalENSG00000171827
TCGA cBioPortalZNF570
AceView (NCBI)ZNF570
Genatlas (Paris)ZNF570
WikiGenes148268
SOURCE (Princeton)ZNF570
Genetics Home Reference (NIH)ZNF570
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF570  -     chr19:37467772-37488652 +  19q13.12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF570  -     19q13.12   [Description]    (hg19-Feb_2009)
EnsemblZNF570 - 19q13.12 [CytoView hg19]  ZNF570 - 19q13.12 [CytoView hg38]
Mapping of homologs : NCBIZNF570 [Mapview hg19]  ZNF570 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK055353 AK297561 AK308252 BC130425 BC130433
RefSeq transcript (Entrez)NM_001300993 NM_001321991 NM_001321992 NM_001321993 NM_001321994 NM_144694
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF570
Cluster EST : UnigeneHs.714241 [ NCBI ]
CGAP (NCI)Hs.714241
Alternative Splicing GalleryENSG00000171827
Gene ExpressionZNF570 [ NCBI-GEO ]   ZNF570 [ EBI - ARRAY_EXPRESS ]   ZNF570 [ SEEK ]   ZNF570 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF570 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)148268
GTEX Portal (Tissue expression)ZNF570
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96NI8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96NI8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96NI8
Splice isoforms : SwissVarQ96NI8
PhosPhoSitePlusQ96NI8
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)    zf-C2H2 (PF00096)    zf-C2H2_6 (PF13912)   
Domain families : Pfam (NCBI)pfam01352    pfam00096    pfam13912   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF570
DMDM Disease mutations148268
Blocks (Seattle)ZNF570
SuperfamilyQ96NI8
Human Protein AtlasENSG00000171827
Peptide AtlasQ96NI8
HPRD11729
IPIIPI00065675   IPI00783915   
Protein Interaction databases
DIP (DOE-UCLA)Q96NI8
IntAct (EBI)Q96NI8
FunCoupENSG00000171827
BioGRIDZNF570
STRING (EMBL)ZNF570
ZODIACZNF570
Ontologies - Pathways
QuickGOQ96NI8
Ontology : AmiGODNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF570
Atlas of Cancer Signalling NetworkZNF570
Wikipedia pathwaysZNF570
Orthology - Evolution
OrthoDB148268
GeneTree (enSembl)ENSG00000171827
Phylogenetic Trees/Animal Genes : TreeFamZNF570
HOVERGENQ96NI8
HOGENOMQ96NI8
Homologs : HomoloGeneZNF570
Homology/Alignments : Family Browser (UCSC)ZNF570
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF570 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF570
dbVarZNF570
ClinVarZNF570
1000_GenomesZNF570 
Exome Variant ServerZNF570
ExAC (Exome Aggregation Consortium)ZNF570 (select the gene name)
Genetic variants : HAPMAP148268
Genomic Variants (DGV)ZNF570 [DGVbeta]
DECIPHERZNF570 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF570 
Mutations
ICGC Data PortalZNF570 
TCGA Data PortalZNF570 
Broad Tumor PortalZNF570
OASIS PortalZNF570 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF570  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF570
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF570
DgiDB (Drug Gene Interaction Database)ZNF570
DoCM (Curated mutations)ZNF570 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF570 (select a term)
intoGenZNF570
Cancer3DZNF570(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZNF570
Genetic Testing Registry ZNF570
NextProtQ96NI8 [Medical]
TSGene148268
GENETestsZNF570
Target ValidationZNF570
Huge Navigator ZNF570 [HugePedia]
snp3D : Map Gene to Disease148268
BioCentury BCIQZNF570
ClinGenZNF570
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD148268
Chemical/Pharm GKB GenePA134943423
Clinical trialZNF570
Miscellaneous
canSAR (ICR)ZNF570 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF570
EVEXZNF570
GoPubMedZNF570
iHOPZNF570
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:44:58 CEST 2017

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