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ZNF571 (zinc finger protein 571)

Identity

Alias_symbol (synonym)HSPC059
Other alias
HGNC (Hugo) ZNF571
LocusID (NCBI) 51276
Atlas_Id 76250
Location 19q13.12  [Link to chromosome band 19q13]
Location_base_pair Starts at 37564253 and ends at 37594792 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF571   25000
Cards
Entrez_Gene (NCBI)ZNF571  51276  zinc finger protein 571
AliasesHSPC059
GeneCards (Weizmann)ZNF571
Ensembl hg19 (Hinxton)ENSG00000180479 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000180479 [Gene_View]  chr19:37564253-37594792 [Contig_View]  ZNF571 [Vega]
ICGC DataPortalENSG00000180479
TCGA cBioPortalZNF571
AceView (NCBI)ZNF571
Genatlas (Paris)ZNF571
WikiGenes51276
SOURCE (Princeton)ZNF571
Genetics Home Reference (NIH)ZNF571
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF571  -     chr19:37564253-37594792 -  19q13.12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF571  -     19q13.12   [Description]    (hg19-Feb_2009)
EnsemblZNF571 - 19q13.12 [CytoView hg19]  ZNF571 - 19q13.12 [CytoView hg38]
Mapping of homologs : NCBIZNF571 [Mapview hg19]  ZNF571 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF161544 AK055039 AK131351 AK291413 AM392926
RefSeq transcript (Entrez)NM_001290314 NM_001321272 NM_016536
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF571
Cluster EST : UnigeneHs.590944 [ NCBI ]
CGAP (NCI)Hs.590944
Alternative Splicing GalleryENSG00000180479
Gene ExpressionZNF571 [ NCBI-GEO ]   ZNF571 [ EBI - ARRAY_EXPRESS ]   ZNF571 [ SEEK ]   ZNF571 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF571 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51276
GTEX Portal (Tissue expression)ZNF571
Human Protein AtlasENSG00000180479-ZNF571 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7Z3V5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ7Z3V5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ7Z3V5
Splice isoforms : SwissVarQ7Z3V5
PhosPhoSitePlusQ7Z3V5
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)    zf-C2H2 (PF00096)    zf-C2H2_6 (PF13912)   
Domain families : Pfam (NCBI)pfam01352    pfam00096    pfam13912   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF571
DMDM Disease mutations51276
Blocks (Seattle)ZNF571
SuperfamilyQ7Z3V5
Human Protein Atlas [tissue]ENSG00000180479-ZNF571 [tissue]
Peptide AtlasQ7Z3V5
HPRD15850
IPIIPI00396069   
Protein Interaction databases
DIP (DOE-UCLA)Q7Z3V5
IntAct (EBI)Q7Z3V5
FunCoupENSG00000180479
BioGRIDZNF571
STRING (EMBL)ZNF571
ZODIACZNF571
Ontologies - Pathways
QuickGOQ7Z3V5
Ontology : AmiGODNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF571
Atlas of Cancer Signalling NetworkZNF571
Wikipedia pathwaysZNF571
Orthology - Evolution
OrthoDB51276
GeneTree (enSembl)ENSG00000180479
Phylogenetic Trees/Animal Genes : TreeFamZNF571
HOVERGENQ7Z3V5
HOGENOMQ7Z3V5
Homologs : HomoloGeneZNF571
Homology/Alignments : Family Browser (UCSC)ZNF571
Gene fusions - Rearrangements
Fusion: Tumor Portal ZNF571
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF571 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF571
dbVarZNF571
ClinVarZNF571
1000_GenomesZNF571 
Exome Variant ServerZNF571
ExAC (Exome Aggregation Consortium)ENSG00000180479
GNOMAD BrowserENSG00000180479
Genetic variants : HAPMAP51276
Genomic Variants (DGV)ZNF571 [DGVbeta]
DECIPHERZNF571 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF571 
Mutations
ICGC Data PortalZNF571 
TCGA Data PortalZNF571 
Broad Tumor PortalZNF571
OASIS PortalZNF571 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF571  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF571
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF571
DgiDB (Drug Gene Interaction Database)ZNF571
DoCM (Curated mutations)ZNF571 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF571 (select a term)
intoGenZNF571
Cancer3DZNF571(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZNF571
Genetic Testing Registry ZNF571
NextProtQ7Z3V5 [Medical]
TSGene51276
GENETestsZNF571
Target ValidationZNF571
Huge Navigator ZNF571 [HugePedia]
snp3D : Map Gene to Disease51276
BioCentury BCIQZNF571
ClinGenZNF571
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51276
Chemical/Pharm GKB GenePA134892585
Clinical trialZNF571
Miscellaneous
canSAR (ICR)ZNF571 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF571
EVEXZNF571
GoPubMedZNF571
iHOPZNF571
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 12:37:26 CET 2017

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