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ZNF572 (zinc finger protein 572)

Identity

Alias_symbol (synonym)FLJ38002
Other alias-
HGNC (Hugo) ZNF572
LocusID (NCBI) 137209
Atlas_Id 76252
Location 8q24.13  [Link to chromosome band 8q24]
Location_base_pair Starts at 124973297 and ends at 124979388 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF572   26758
Cards
Entrez_Gene (NCBI)ZNF572  137209  zinc finger protein 572
Aliases
GeneCards (Weizmann)ZNF572
Ensembl hg19 (Hinxton)ENSG00000180938 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000180938 [Gene_View]  chr8:124973297-124979388 [Contig_View]  ZNF572 [Vega]
ICGC DataPortalENSG00000180938
TCGA cBioPortalZNF572
AceView (NCBI)ZNF572
Genatlas (Paris)ZNF572
WikiGenes137209
SOURCE (Princeton)ZNF572
Genetics Home Reference (NIH)ZNF572
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF572  -     chr8:124973297-124979388 +  8q24.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF572  -     8q24.13   [Description]    (hg19-Feb_2009)
EnsemblZNF572 - 8q24.13 [CytoView hg19]  ZNF572 - 8q24.13 [CytoView hg38]
Mapping of homologs : NCBIZNF572 [Mapview hg19]  ZNF572 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK095321 AM393384 BC128380 BC130515 BC130517
RefSeq transcript (Entrez)NM_152412
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF572
Cluster EST : UnigeneHs.651593 [ NCBI ]
CGAP (NCI)Hs.651593
Alternative Splicing GalleryENSG00000180938
Gene ExpressionZNF572 [ NCBI-GEO ]   ZNF572 [ EBI - ARRAY_EXPRESS ]   ZNF572 [ SEEK ]   ZNF572 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF572 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)137209
GTEX Portal (Tissue expression)ZNF572
Human Protein AtlasENSG00000180938-ZNF572 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7Z3I7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ7Z3I7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ7Z3I7
Splice isoforms : SwissVarQ7Z3I7
PhosPhoSitePlusQ7Z3I7
Domaine pattern : Prosite (Expaxy)ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)zf-C2H2 (PF00096)    zf-C2H2_6 (PF13912)   
Domain families : Pfam (NCBI)pfam00096    pfam13912   
Domain families : Smart (EMBL)ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF572
DMDM Disease mutations137209
Blocks (Seattle)ZNF572
SuperfamilyQ7Z3I7
Human Protein Atlas [tissue]ENSG00000180938-ZNF572 [tissue]
Peptide AtlasQ7Z3I7
HPRD15851
IPIIPI00174865   
Protein Interaction databases
DIP (DOE-UCLA)Q7Z3I7
IntAct (EBI)Q7Z3I7
FunCoupENSG00000180938
BioGRIDZNF572
STRING (EMBL)ZNF572
ZODIACZNF572
Ontologies - Pathways
QuickGOQ7Z3I7
Ontology : AmiGODNA binding  transcription factor activity, sequence-specific DNA binding  protein binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  transcription factor activity, sequence-specific DNA binding  protein binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF572
Atlas of Cancer Signalling NetworkZNF572
Wikipedia pathwaysZNF572
Orthology - Evolution
OrthoDB137209
GeneTree (enSembl)ENSG00000180938
Phylogenetic Trees/Animal Genes : TreeFamZNF572
HOVERGENQ7Z3I7
HOGENOMQ7Z3I7
Homologs : HomoloGeneZNF572
Homology/Alignments : Family Browser (UCSC)ZNF572
Gene fusions - Rearrangements
Fusion: Tumor Portal ZNF572
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF572 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF572
dbVarZNF572
ClinVarZNF572
1000_GenomesZNF572 
Exome Variant ServerZNF572
ExAC (Exome Aggregation Consortium)ENSG00000180938
GNOMAD BrowserENSG00000180938
Genetic variants : HAPMAP137209
Genomic Variants (DGV)ZNF572 [DGVbeta]
DECIPHERZNF572 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF572 
Mutations
ICGC Data PortalZNF572 
TCGA Data PortalZNF572 
Broad Tumor PortalZNF572
OASIS PortalZNF572 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF572  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF572
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF572
DgiDB (Drug Gene Interaction Database)ZNF572
DoCM (Curated mutations)ZNF572 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF572 (select a term)
intoGenZNF572
Cancer3DZNF572(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZNF572
Genetic Testing Registry ZNF572
NextProtQ7Z3I7 [Medical]
TSGene137209
GENETestsZNF572
Target ValidationZNF572
Huge Navigator ZNF572 [HugePedia]
snp3D : Map Gene to Disease137209
BioCentury BCIQZNF572
ClinGenZNF572
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD137209
Chemical/Pharm GKB GenePA134924678
Clinical trialZNF572
Miscellaneous
canSAR (ICR)ZNF572 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF572
EVEXZNF572
GoPubMedZNF572
iHOPZNF572
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 12:37:26 CET 2017

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