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ZNF573 (zinc finger protein 573)

Identity

Alias_symbol (synonym)FLJ30921
Other alias-
HGNC (Hugo) ZNF573
LocusID (NCBI) 126231
Atlas_Id 76253
Location 19q13.12  [Link to chromosome band 19q13]
Location_base_pair Starts at 37738302 and ends at 37779590 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
SYMPK (19q13.32) / ZNF573 (19q13.12)ZNF573 (19q13.12) / ZNF544 (19q13.43)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF573   26420
Cards
Entrez_Gene (NCBI)ZNF573  126231  zinc finger protein 573
Aliases
GeneCards (Weizmann)ZNF573
Ensembl hg19 (Hinxton)ENSG00000189144 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000189144 [Gene_View]  chr19:37738302-37779590 [Contig_View]  ZNF573 [Vega]
ICGC DataPortalENSG00000189144
TCGA cBioPortalZNF573
AceView (NCBI)ZNF573
Genatlas (Paris)ZNF573
WikiGenes126231
SOURCE (Princeton)ZNF573
Genetics Home Reference (NIH)ZNF573
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF573  -     chr19:37738302-37779590 -  19q13.12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF573  -     19q13.12   [Description]    (hg19-Feb_2009)
EnsemblZNF573 - 19q13.12 [CytoView hg19]  ZNF573 - 19q13.12 [CytoView hg38]
Mapping of homologs : NCBIZNF573 [Mapview hg19]  ZNF573 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK055483 AK074539 BC015418 BC029468 BC042170
RefSeq transcript (Entrez)NM_001172689 NM_001172690 NM_001172691 NM_001172692 NM_152360
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF573
Cluster EST : UnigeneHs.531262 [ NCBI ]
CGAP (NCI)Hs.531262
Alternative Splicing GalleryENSG00000189144
Gene ExpressionZNF573 [ NCBI-GEO ]   ZNF573 [ EBI - ARRAY_EXPRESS ]   ZNF573 [ SEEK ]   ZNF573 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF573 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)126231
GTEX Portal (Tissue expression)ZNF573
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86YE8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86YE8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86YE8
Splice isoforms : SwissVarQ86YE8
PhosPhoSitePlusQ86YE8
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)    zf-C2H2 (PF00096)    zf-C2H2_6 (PF13912)   
Domain families : Pfam (NCBI)pfam01352    pfam00096    pfam13912   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF573
DMDM Disease mutations126231
Blocks (Seattle)ZNF573
SuperfamilyQ86YE8
Human Protein AtlasENSG00000189144
Peptide AtlasQ86YE8
HPRD15852
IPIIPI00827764   IPI00418297   IPI00827652   IPI00398310   IPI00788685   
Protein Interaction databases
DIP (DOE-UCLA)Q86YE8
IntAct (EBI)Q86YE8
FunCoupENSG00000189144
BioGRIDZNF573
STRING (EMBL)ZNF573
ZODIACZNF573
Ontologies - Pathways
QuickGOQ86YE8
Ontology : AmiGODNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF573
Atlas of Cancer Signalling NetworkZNF573
Wikipedia pathwaysZNF573
Orthology - Evolution
OrthoDB126231
GeneTree (enSembl)ENSG00000189144
Phylogenetic Trees/Animal Genes : TreeFamZNF573
HOVERGENQ86YE8
HOGENOMQ86YE8
Homologs : HomoloGeneZNF573
Homology/Alignments : Family Browser (UCSC)ZNF573
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF573 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF573
dbVarZNF573
ClinVarZNF573
1000_GenomesZNF573 
Exome Variant ServerZNF573
ExAC (Exome Aggregation Consortium)ZNF573 (select the gene name)
Genetic variants : HAPMAP126231
Genomic Variants (DGV)ZNF573 [DGVbeta]
DECIPHERZNF573 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF573 
Mutations
ICGC Data PortalZNF573 
TCGA Data PortalZNF573 
Broad Tumor PortalZNF573
OASIS PortalZNF573 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF573  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF573
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF573
DgiDB (Drug Gene Interaction Database)ZNF573
DoCM (Curated mutations)ZNF573 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF573 (select a term)
intoGenZNF573
Cancer3DZNF573(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZNF573
Genetic Testing Registry ZNF573
NextProtQ86YE8 [Medical]
TSGene126231
GENETestsZNF573
Target ValidationZNF573
Huge Navigator ZNF573 [HugePedia]
snp3D : Map Gene to Disease126231
BioCentury BCIQZNF573
ClinGenZNF573
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD126231
Chemical/Pharm GKB GenePA134883623
Clinical trialZNF573
Miscellaneous
canSAR (ICR)ZNF573 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF573
EVEXZNF573
GoPubMedZNF573
iHOPZNF573
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:44:59 CEST 2017

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