Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

ZNF574 (zinc finger protein 574)

Identity

Alias_symbol (synonym)FLJ22059
Other aliasFP972
HGNC (Hugo) ZNF574
LocusID (NCBI) 64763
Atlas_Id 76254
Location 19q13.2  [Link to chromosome band 19q13]
Location_base_pair Starts at 42068477 and ends at 42081567 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
GRAP (17p11.2) / ZNF574 (19q13.2)SLC6A20 (3p21.31) / ZNF574 (19q13.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF574   26166
Cards
Entrez_Gene (NCBI)ZNF574  64763  zinc finger protein 574
AliasesFP972
GeneCards (Weizmann)ZNF574
Ensembl hg19 (Hinxton)ENSG00000105732 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000105732 [Gene_View]  chr19:42068477-42081567 [Contig_View]  ZNF574 [Vega]
ICGC DataPortalENSG00000105732
TCGA cBioPortalZNF574
AceView (NCBI)ZNF574
Genatlas (Paris)ZNF574
WikiGenes64763
SOURCE (Princeton)ZNF574
Genetics Home Reference (NIH)ZNF574
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF574  -     chr19:42068477-42081567 +  19q13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF574  -     19q13.2   [Description]    (hg19-Feb_2009)
EnsemblZNF574 - 19q13.2 [CytoView hg19]  ZNF574 - 19q13.2 [CytoView hg38]
Mapping of homologs : NCBIZNF574 [Mapview hg19]  ZNF574 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF447880 AK025712 AK027895 AK074788 AK131369
RefSeq transcript (Entrez)NM_001330519 NM_022752
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF574
Cluster EST : UnigeneHs.13323 [ NCBI ]
CGAP (NCI)Hs.13323
Alternative Splicing GalleryENSG00000105732
Gene ExpressionZNF574 [ NCBI-GEO ]   ZNF574 [ EBI - ARRAY_EXPRESS ]   ZNF574 [ SEEK ]   ZNF574 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF574 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)64763
GTEX Portal (Tissue expression)ZNF574
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZN55   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZN55  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZN55
Splice isoforms : SwissVarQ6ZN55
PhosPhoSitePlusQ6ZN55
Domaine pattern : Prosite (Expaxy)ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)zf-C2H2 (PF00096)    zf-C2H2_6 (PF13912)   
Domain families : Pfam (NCBI)pfam00096    pfam13912   
Domain families : Smart (EMBL)ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF574
DMDM Disease mutations64763
Blocks (Seattle)ZNF574
SuperfamilyQ6ZN55
Human Protein AtlasENSG00000105732
Peptide AtlasQ6ZN55
HPRD15853
IPIIPI00478854   IPI00434708   IPI00465100   
Protein Interaction databases
DIP (DOE-UCLA)Q6ZN55
IntAct (EBI)Q6ZN55
FunCoupENSG00000105732
BioGRIDZNF574
STRING (EMBL)ZNF574
ZODIACZNF574
Ontologies - Pathways
QuickGOQ6ZN55
Ontology : AmiGODNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF574
Atlas of Cancer Signalling NetworkZNF574
Wikipedia pathwaysZNF574
Orthology - Evolution
OrthoDB64763
GeneTree (enSembl)ENSG00000105732
Phylogenetic Trees/Animal Genes : TreeFamZNF574
HOVERGENQ6ZN55
HOGENOMQ6ZN55
Homologs : HomoloGeneZNF574
Homology/Alignments : Family Browser (UCSC)ZNF574
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF574 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF574
dbVarZNF574
ClinVarZNF574
1000_GenomesZNF574 
Exome Variant ServerZNF574
ExAC (Exome Aggregation Consortium)ZNF574 (select the gene name)
Genetic variants : HAPMAP64763
Genomic Variants (DGV)ZNF574 [DGVbeta]
DECIPHERZNF574 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF574 
Mutations
ICGC Data PortalZNF574 
TCGA Data PortalZNF574 
Broad Tumor PortalZNF574
OASIS PortalZNF574 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF574  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF574
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF574
DgiDB (Drug Gene Interaction Database)ZNF574
DoCM (Curated mutations)ZNF574 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF574 (select a term)
intoGenZNF574
Cancer3DZNF574(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZNF574
Genetic Testing Registry ZNF574
NextProtQ6ZN55 [Medical]
TSGene64763
GENETestsZNF574
Target ValidationZNF574
Huge Navigator ZNF574 [HugePedia]
snp3D : Map Gene to Disease64763
BioCentury BCIQZNF574
ClinGenZNF574
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD64763
Chemical/Pharm GKB GenePA134916492
Clinical trialZNF574
Miscellaneous
canSAR (ICR)ZNF574 (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF574
EVEXZNF574
GoPubMedZNF574
iHOPZNF574
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:44:59 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.