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ZNF575 (zinc finger protein 575)

Identity

Alias_symbol (synonym)FLJ32567
Other alias-
HGNC (Hugo) ZNF575
LocusID (NCBI) 284346
Atlas_Id 76255
Location 19q13.31  [Link to chromosome band 19q13]
Location_base_pair Starts at 43533188 and ends at 43536132 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF575   27606
Cards
Entrez_Gene (NCBI)ZNF575  284346  zinc finger protein 575
Aliases
GeneCards (Weizmann)ZNF575
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr19:43533188-43536132 [Contig_View]  ZNF575 [Vega]
TCGA cBioPortalZNF575
AceView (NCBI)ZNF575
Genatlas (Paris)ZNF575
WikiGenes284346
SOURCE (Princeton)ZNF575
Genetics Home Reference (NIH)ZNF575
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF575  -     chr19:43533188-43536132 +  19q13.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF575  -     19q13.31   [Description]    (hg19-Feb_2009)
EnsemblZNF575 - 19q13.31 [CytoView hg19]  ZNF575 - 19q13.31 [CytoView hg38]
Mapping of homologs : NCBIZNF575 [Mapview hg19]  ZNF575 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK057129 AK301820 BC043611
RefSeq transcript (Entrez)NM_174945
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF575
Cluster EST : UnigeneHs.213534 [ NCBI ]
CGAP (NCI)Hs.213534
Gene ExpressionZNF575 [ NCBI-GEO ]   ZNF575 [ EBI - ARRAY_EXPRESS ]   ZNF575 [ SEEK ]   ZNF575 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF575 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)284346
GTEX Portal (Tissue expression)ZNF575
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86XF7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86XF7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86XF7
Splice isoforms : SwissVarQ86XF7
PhosPhoSitePlusQ86XF7
Domaine pattern : Prosite (Expaxy)ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)zf-C2H2 (PF00096)   
Domain families : Pfam (NCBI)pfam00096   
Domain families : Smart (EMBL)ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF575
DMDM Disease mutations284346
Blocks (Seattle)ZNF575
SuperfamilyQ86XF7
Peptide AtlasQ86XF7
HPRD15854
IPIIPI00645023   IPI00329217   
Protein Interaction databases
DIP (DOE-UCLA)Q86XF7
IntAct (EBI)Q86XF7
BioGRIDZNF575
STRING (EMBL)ZNF575
ZODIACZNF575
Ontologies - Pathways
QuickGOQ86XF7
Ontology : AmiGODNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF575
Atlas of Cancer Signalling NetworkZNF575
Wikipedia pathwaysZNF575
Orthology - Evolution
OrthoDB284346
Phylogenetic Trees/Animal Genes : TreeFamZNF575
HOVERGENQ86XF7
HOGENOMQ86XF7
Homologs : HomoloGeneZNF575
Homology/Alignments : Family Browser (UCSC)ZNF575
Gene fusions - Rearrangements
Fusion: Tumor Portal ZNF575
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF575 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF575
dbVarZNF575
ClinVarZNF575
1000_GenomesZNF575 
Exome Variant ServerZNF575
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP284346
Genomic Variants (DGV)ZNF575 [DGVbeta]
DECIPHERZNF575 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF575 
Mutations
ICGC Data PortalZNF575 
TCGA Data PortalZNF575 
Broad Tumor PortalZNF575
OASIS PortalZNF575 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF575  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF575
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF575
DgiDB (Drug Gene Interaction Database)ZNF575
DoCM (Curated mutations)ZNF575 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF575 (select a term)
intoGenZNF575
Cancer3DZNF575(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZNF575
Genetic Testing Registry ZNF575
NextProtQ86XF7 [Medical]
TSGene284346
GENETestsZNF575
Target ValidationZNF575
Huge Navigator ZNF575 [HugePedia]
snp3D : Map Gene to Disease284346
BioCentury BCIQZNF575
ClinGenZNF575
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD284346
PA134958979
Clinical trialZNF575
Miscellaneous
canSAR (ICR)ZNF575 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF575
EVEXZNF575
GoPubMedZNF575
iHOPZNF575
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 12:37:27 CET 2017

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