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ZNF576 (zinc finger protein 576)

Identity

Alias_symbol (synonym)MGC2508
Other alias-
HGNC (Hugo) ZNF576
LocusID (NCBI) 79177
Atlas_Id 76256
Location 19q13.31  [Link to chromosome band 19q13]
Location_base_pair Starts at 43596586 and ends at 43600435 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
PLAUR (19q13.31) / ZNF576 (19q13.31)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF576   28357
Cards
Entrez_Gene (NCBI)ZNF576  79177  zinc finger protein 576
Aliases
GeneCards (Weizmann)ZNF576
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr19:43596586-43600435 [Contig_View]  ZNF576 [Vega]
TCGA cBioPortalZNF576
AceView (NCBI)ZNF576
Genatlas (Paris)ZNF576
WikiGenes79177
SOURCE (Princeton)ZNF576
Genetics Home Reference (NIH)ZNF576
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF576  -     chr19:43596586-43600435 +  19q13.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF576  -     19q13.31   [Description]    (hg19-Feb_2009)
EnsemblZNF576 - 19q13.31 [CytoView hg19]  ZNF576 - 19q13.31 [CytoView hg38]
Mapping of homologs : NCBIZNF576 [Mapview hg19]  ZNF576 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK026353 BC002981 BP358040 EU446526 JF432463
RefSeq transcript (Entrez)NM_001145347 NM_024327
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF576
Cluster EST : UnigeneHs.11110 [ NCBI ]
CGAP (NCI)Hs.11110
Gene ExpressionZNF576 [ NCBI-GEO ]   ZNF576 [ EBI - ARRAY_EXPRESS ]   ZNF576 [ SEEK ]   ZNF576 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF576 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79177
GTEX Portal (Tissue expression)ZNF576
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H609   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H609  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H609
Splice isoforms : SwissVarQ9H609
PhosPhoSitePlusQ9H609
Domaine pattern : Prosite (Expaxy)ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)zf-C2H2 (PF00096)    zf-C2H2_6 (PF13912)   
Domain families : Pfam (NCBI)pfam00096    pfam13912   
Domain families : Smart (EMBL)ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF576
DMDM Disease mutations79177
Blocks (Seattle)ZNF576
SuperfamilyQ9H609
Peptide AtlasQ9H609
HPRD15855
IPIIPI00550206   
Protein Interaction databases
DIP (DOE-UCLA)Q9H609
IntAct (EBI)Q9H609
BioGRIDZNF576
STRING (EMBL)ZNF576
ZODIACZNF576
Ontologies - Pathways
QuickGOQ9H609
Ontology : AmiGODNA binding  protein binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  protein binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF576
Atlas of Cancer Signalling NetworkZNF576
Wikipedia pathwaysZNF576
Orthology - Evolution
OrthoDB79177
Phylogenetic Trees/Animal Genes : TreeFamZNF576
HOVERGENQ9H609
HOGENOMQ9H609
Homologs : HomoloGeneZNF576
Homology/Alignments : Family Browser (UCSC)ZNF576
Gene fusions - Rearrangements
Fusion: Tumor Portal ZNF576
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF576 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF576
dbVarZNF576
ClinVarZNF576
1000_GenomesZNF576 
Exome Variant ServerZNF576
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP79177
Genomic Variants (DGV)ZNF576 [DGVbeta]
DECIPHERZNF576 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF576 
Mutations
ICGC Data PortalZNF576 
TCGA Data PortalZNF576 
Broad Tumor PortalZNF576
OASIS PortalZNF576 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF576  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF576
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF576
DgiDB (Drug Gene Interaction Database)ZNF576
DoCM (Curated mutations)ZNF576 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF576 (select a term)
intoGenZNF576
Cancer3DZNF576(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZNF576
Genetic Testing Registry ZNF576
NextProtQ9H609 [Medical]
TSGene79177
GENETestsZNF576
Target ValidationZNF576
Huge Navigator ZNF576 [HugePedia]
snp3D : Map Gene to Disease79177
BioCentury BCIQZNF576
ClinGenZNF576
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79177
Chemical/Pharm GKB GenePA134950110
Clinical trialZNF576
Miscellaneous
canSAR (ICR)ZNF576 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF576
EVEXZNF576
GoPubMedZNF576
iHOPZNF576
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 12:37:27 CET 2017

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