Atlas of Genetics and Cytogenetics in Oncology and Haematology


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ZNF578 (zinc finger protein 578)

Identity

Alias_symbol (synonym)FLJ31384
Other alias-
HGNC (Hugo) ZNF578
LocusID (NCBI) 147660
Atlas_Id 76257
Location 19q13.41  [Link to chromosome band 19q13]
Location_base_pair Starts at 52453576 and ends at 52516878 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
WDFY3 (4q21.23) / ZNF578 (19q13.41)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF578   26449
Cards
Entrez_Gene (NCBI)ZNF578  147660  zinc finger protein 578
Aliases
GeneCards (Weizmann)ZNF578
Ensembl hg19 (Hinxton)ENSG00000258405 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000258405 [Gene_View]  chr19:52453576-52516878 [Contig_View]  ZNF578 [Vega]
ICGC DataPortalENSG00000258405
TCGA cBioPortalZNF578
AceView (NCBI)ZNF578
Genatlas (Paris)ZNF578
WikiGenes147660
SOURCE (Princeton)ZNF578
Genetics Home Reference (NIH)ZNF578
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF578  -     chr19:52453576-52516878 +  19q13.41   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF578  -     19q13.41   [Description]    (hg19-Feb_2009)
EnsemblZNF578 - 19q13.41 [CytoView hg19]  ZNF578 - 19q13.41 [CytoView hg38]
Mapping of homologs : NCBIZNF578 [Mapview hg19]  ZNF578 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB091373 AB091374 AB091375 AB091376 AK055946
RefSeq transcript (Entrez)NM_001099694 NM_152472
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF578
Cluster EST : UnigeneHs.157287 [ NCBI ]
CGAP (NCI)Hs.157287
Alternative Splicing GalleryENSG00000258405
Gene ExpressionZNF578 [ NCBI-GEO ]   ZNF578 [ EBI - ARRAY_EXPRESS ]   ZNF578 [ SEEK ]   ZNF578 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF578 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)147660
GTEX Portal (Tissue expression)ZNF578
Human Protein AtlasENSG00000258405-ZNF578 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96N58   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96N58  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96N58
Splice isoforms : SwissVarQ96N58
PhosPhoSitePlusQ96N58
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)    zf-C2H2 (PF00096)    zf-C2H2_6 (PF13912)   
Domain families : Pfam (NCBI)pfam01352    pfam00096    pfam13912   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF578
DMDM Disease mutations147660
Blocks (Seattle)ZNF578
SuperfamilyQ96N58
Human Protein Atlas [tissue]ENSG00000258405-ZNF578 [tissue]
Peptide AtlasQ96N58
HPRD15857
IPIIPI00747376   IPI00644095   
Protein Interaction databases
DIP (DOE-UCLA)Q96N58
IntAct (EBI)Q96N58
FunCoupENSG00000258405
BioGRIDZNF578
STRING (EMBL)ZNF578
ZODIACZNF578
Ontologies - Pathways
QuickGOQ96N58
Ontology : AmiGODNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  cytoplasm  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  cytoplasm  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF578
Atlas of Cancer Signalling NetworkZNF578
Wikipedia pathwaysZNF578
Orthology - Evolution
OrthoDB147660
GeneTree (enSembl)ENSG00000258405
Phylogenetic Trees/Animal Genes : TreeFamZNF578
HOVERGENQ96N58
HOGENOMQ96N58
Homologs : HomoloGeneZNF578
Homology/Alignments : Family Browser (UCSC)ZNF578
Gene fusions - Rearrangements
Tumor Fusion PortalZNF578
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF578 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF578
dbVarZNF578
ClinVarZNF578
1000_GenomesZNF578 
Exome Variant ServerZNF578
ExAC (Exome Aggregation Consortium)ENSG00000258405
GNOMAD BrowserENSG00000258405
Genetic variants : HAPMAP147660
Genomic Variants (DGV)ZNF578 [DGVbeta]
DECIPHERZNF578 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF578 
Mutations
ICGC Data PortalZNF578 
TCGA Data PortalZNF578 
Broad Tumor PortalZNF578
OASIS PortalZNF578 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDZNF578
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF578
DgiDB (Drug Gene Interaction Database)ZNF578
DoCM (Curated mutations)ZNF578 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF578 (select a term)
intoGenZNF578
Cancer3DZNF578(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETZNF578
MedgenZNF578
Genetic Testing Registry ZNF578
NextProtQ96N58 [Medical]
TSGene147660
GENETestsZNF578
Target ValidationZNF578
Huge Navigator ZNF578 [HugePedia]
snp3D : Map Gene to Disease147660
BioCentury BCIQZNF578
ClinGenZNF578
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD147660
Chemical/Pharm GKB GenePA134936072
Clinical trialZNF578
Miscellaneous
canSAR (ICR)ZNF578 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF578
EVEXZNF578
GoPubMedZNF578
iHOPZNF578
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:40:49 CET 2017

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