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ZNF579 (zinc finger protein 579)

Identity

Alias_symbol (synonym)FLJ35453
Other alias-
HGNC (Hugo) ZNF579
LocusID (NCBI) 163033
Atlas_Id 76258
Location 19q13.42  [Link to chromosome band 19q13]
Location_base_pair Starts at 55577525 and ends at 55580845 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF579   26646
Cards
Entrez_Gene (NCBI)ZNF579  163033  zinc finger protein 579
Aliases
GeneCards (Weizmann)ZNF579
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr19:55577525-55580845 [Contig_View]  ZNF579 [Vega]
TCGA cBioPortalZNF579
AceView (NCBI)ZNF579
Genatlas (Paris)ZNF579
WikiGenes163033
SOURCE (Princeton)ZNF579
Genetics Home Reference (NIH)ZNF579
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF579  -     chr19:55577525-55580845 -  19q13.42   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF579  -     19q13.42   [Description]    (hg19-Feb_2009)
EnsemblZNF579 - 19q13.42 [CytoView hg19]  ZNF579 - 19q13.42 [CytoView hg38]
Mapping of homologs : NCBIZNF579 [Mapview hg19]  ZNF579 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK092772 AW003562 BC042926 CN340494 CX781546
RefSeq transcript (Entrez)NM_152600
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF579
Cluster EST : UnigeneHs.112529 [ NCBI ]
CGAP (NCI)Hs.112529
Gene ExpressionZNF579 [ NCBI-GEO ]   ZNF579 [ EBI - ARRAY_EXPRESS ]   ZNF579 [ SEEK ]   ZNF579 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF579 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)163033
GTEX Portal (Tissue expression)ZNF579
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NAF0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NAF0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NAF0
Splice isoforms : SwissVarQ8NAF0
PhosPhoSitePlusQ8NAF0
Domaine pattern : Prosite (Expaxy)ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF579
DMDM Disease mutations163033
Blocks (Seattle)ZNF579
SuperfamilyQ8NAF0
Peptide AtlasQ8NAF0
HPRD11730
IPIIPI00167985   
Protein Interaction databases
DIP (DOE-UCLA)Q8NAF0
IntAct (EBI)Q8NAF0
BioGRIDZNF579
STRING (EMBL)ZNF579
ZODIACZNF579
Ontologies - Pathways
QuickGOQ8NAF0
Ontology : AmiGODNA binding  RNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  RNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF579
Atlas of Cancer Signalling NetworkZNF579
Wikipedia pathwaysZNF579
Orthology - Evolution
OrthoDB163033
Phylogenetic Trees/Animal Genes : TreeFamZNF579
HOVERGENQ8NAF0
HOGENOMQ8NAF0
Homologs : HomoloGeneZNF579
Homology/Alignments : Family Browser (UCSC)ZNF579
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF579 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF579
dbVarZNF579
ClinVarZNF579
1000_GenomesZNF579 
Exome Variant ServerZNF579
ExAC (Exome Aggregation Consortium)ZNF579 (select the gene name)
Genetic variants : HAPMAP163033
Genomic Variants (DGV)ZNF579 [DGVbeta]
DECIPHERZNF579 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF579 
Mutations
ICGC Data PortalZNF579 
TCGA Data PortalZNF579 
Broad Tumor PortalZNF579
OASIS PortalZNF579 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF579  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF579
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF579
DgiDB (Drug Gene Interaction Database)ZNF579
DoCM (Curated mutations)ZNF579 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF579 (select a term)
intoGenZNF579
Cancer3DZNF579(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZNF579
Genetic Testing Registry ZNF579
NextProtQ8NAF0 [Medical]
TSGene163033
GENETestsZNF579
Target ValidationZNF579
Huge Navigator ZNF579 [HugePedia]
snp3D : Map Gene to Disease163033
BioCentury BCIQZNF579
ClinGenZNF579
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD163033
Chemical/Pharm GKB GenePA134930711
Clinical trialZNF579
Miscellaneous
canSAR (ICR)ZNF579 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF579
EVEXZNF579
GoPubMedZNF579
iHOPZNF579
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:45:00 CEST 2017

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