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ZNF580 (zinc finger protein 580)

Identity

Other alias-
HGNC (Hugo) ZNF580
LocusID (NCBI) 51157
Atlas_Id 52586
Location 19q13.42  [Link to chromosome band 19q13]
Location_base_pair Starts at 56153463 and ends at 56154836 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF580   29473
Cards
Entrez_Gene (NCBI)ZNF580  51157  zinc finger protein 580
Aliases
GeneCards (Weizmann)ZNF580
Ensembl hg19 (Hinxton)ENSG00000213015 [Gene_View]  chr19:56153463-56154836 [Contig_View]  ZNF580 [Vega]
Ensembl hg38 (Hinxton)ENSG00000213015 [Gene_View]  chr19:56153463-56154836 [Contig_View]  ZNF580 [Vega]
ICGC DataPortalENSG00000213015
TCGA cBioPortalZNF580
AceView (NCBI)ZNF580
Genatlas (Paris)ZNF580
WikiGenes51157
SOURCE (Princeton)ZNF580
Genetics Home Reference (NIH)ZNF580
Genomic and cartography
GoldenPath hg19 (UCSC)ZNF580  -     chr19:56153463-56154836 +  19q13.42   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ZNF580  -     19q13.42   [Description]    (hg38-Dec_2013)
EnsemblZNF580 - 19q13.42 [CytoView hg19]  ZNF580 - 19q13.42 [CytoView hg38]
Mapping of homologs : NCBIZNF580 [Mapview hg19]  ZNF580 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF184939 AK123294 AK314888 AL359054 BC017698
RefSeq transcript (Entrez)NM_001163423 NM_016202 NM_207115
RefSeq genomic (Entrez)NC_000019 NC_018930 NT_011109 NW_004929415
Consensus coding sequences : CCDS (NCBI)ZNF580
Cluster EST : UnigeneHs.631551 [ NCBI ]
CGAP (NCI)Hs.631551
Alternative Splicing GalleryENSG00000213015
Gene ExpressionZNF580 [ NCBI-GEO ]   ZNF580 [ EBI - ARRAY_EXPRESS ]   ZNF580 [ SEEK ]   ZNF580 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF580 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51157
GTEX Portal (Tissue expression)ZNF580
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UK33   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UK33  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UK33
Splice isoforms : SwissVarQ9UK33
PhosPhoSitePlusQ9UK33
Domaine pattern : Prosite (Expaxy)ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)zf-C2H2 (PF00096)   
Domain families : Pfam (NCBI)pfam00096   
Domain families : Smart (EMBL)ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF580
DMDM Disease mutations51157
Blocks (Seattle)ZNF580
SuperfamilyQ9UK33
Human Protein AtlasENSG00000213015
Peptide AtlasQ9UK33
HPRD18353
IPIIPI00478837   IPI00981246   
Protein Interaction databases
DIP (DOE-UCLA)Q9UK33
IntAct (EBI)Q9UK33
FunCoupENSG00000213015
BioGRIDZNF580
STRING (EMBL)ZNF580
ZODIACZNF580
Ontologies - Pathways
QuickGOQ9UK33
Ontology : AmiGOpositive regulation of endothelial cell proliferation  positive regulation of leukocyte chemotaxis  DNA binding  protein binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  chemotaxis  inflammatory response  positive regulation of endothelial cell migration  positive regulation of gene expression  positive regulation of interleukin-8 production  metal ion binding  cellular response to hydrogen peroxide  
Ontology : EGO-EBIpositive regulation of endothelial cell proliferation  positive regulation of leukocyte chemotaxis  DNA binding  protein binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  chemotaxis  inflammatory response  positive regulation of endothelial cell migration  positive regulation of gene expression  positive regulation of interleukin-8 production  metal ion binding  cellular response to hydrogen peroxide  
NDEx NetworkZNF580
Atlas of Cancer Signalling NetworkZNF580
Wikipedia pathwaysZNF580
Orthology - Evolution
OrthoDB51157
GeneTree (enSembl)ENSG00000213015
Phylogenetic Trees/Animal Genes : TreeFamZNF580
HOVERGENQ9UK33
HOGENOMQ9UK33
Homologs : HomoloGeneZNF580
Homology/Alignments : Family Browser (UCSC)ZNF580
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF580 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF580
dbVarZNF580
ClinVarZNF580
1000_GenomesZNF580 
Exome Variant ServerZNF580
ExAC (Exome Aggregation Consortium)ZNF580 (select the gene name)
Genetic variants : HAPMAP51157
Genomic Variants (DGV)ZNF580 [DGVbeta]
DECIPHER (Syndromes)19:56153463-56154836  ENSG00000213015
CONAN: Copy Number AnalysisZNF580 
Mutations
ICGC Data PortalZNF580 
TCGA Data PortalZNF580 
Broad Tumor PortalZNF580
OASIS PortalZNF580 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF580  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF580
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF580
DgiDB (Drug Gene Interaction Database)ZNF580
DoCM (Curated mutations)ZNF580 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF580 (select a term)
intoGenZNF580
Cancer3DZNF580(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZNF580
Genetic Testing Registry ZNF580
NextProtQ9UK33 [Medical]
TSGene51157
GENETestsZNF580
Huge Navigator ZNF580 [HugePedia]
snp3D : Map Gene to Disease51157
BioCentury BCIQZNF580
ClinGenZNF580
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51157
Chemical/Pharm GKB GenePA134867016
Clinical trialZNF580
Miscellaneous
canSAR (ICR)ZNF580 (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF580
EVEXZNF580
GoPubMedZNF580
iHOPZNF580
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:25:49 CEST 2017

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