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ZNF581 (zinc finger protein 581)

Identity

Alias_symbol (synonym)HSPC189
FLJ22550
Other alias
HGNC (Hugo) ZNF581
LocusID (NCBI) 51545
Atlas_Id 76259
Location 19q13.42  [Link to chromosome band 19q13]
Location_base_pair Starts at 55643620 and ends at 55645623 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF581   25017
Cards
Entrez_Gene (NCBI)ZNF581  51545  zinc finger protein 581
AliasesHSPC189
GeneCards (Weizmann)ZNF581
Ensembl hg19 (Hinxton)ENSG00000171425 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000171425 [Gene_View]  chr19:55643620-55645623 [Contig_View]  ZNF581 [Vega]
ICGC DataPortalENSG00000171425
TCGA cBioPortalZNF581
AceView (NCBI)ZNF581
Genatlas (Paris)ZNF581
WikiGenes51545
SOURCE (Princeton)ZNF581
Genetics Home Reference (NIH)ZNF581
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF581  -     chr19:55643620-55645623 +  19q13.42   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF581  -     19q13.42   [Description]    (hg19-Feb_2009)
EnsemblZNF581 - 19q13.42 [CytoView hg19]  ZNF581 - 19q13.42 [CytoView hg38]
Mapping of homologs : NCBIZNF581 [Mapview hg19]  ZNF581 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF151023 AK026203 AK315603 BC001219 BC010097
RefSeq transcript (Entrez)NM_016535
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF581
Cluster EST : UnigeneHs.20768 [ NCBI ]
CGAP (NCI)Hs.20768
Alternative Splicing GalleryENSG00000171425
Gene ExpressionZNF581 [ NCBI-GEO ]   ZNF581 [ EBI - ARRAY_EXPRESS ]   ZNF581 [ SEEK ]   ZNF581 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF581 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51545
GTEX Portal (Tissue expression)ZNF581
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9P0T4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9P0T4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9P0T4
Splice isoforms : SwissVarQ9P0T4
PhosPhoSitePlusQ9P0T4
Domaine pattern : Prosite (Expaxy)ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)zf-C2H2 (PF00096)   
Domain families : Pfam (NCBI)pfam00096   
Domain families : Smart (EMBL)ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF581
DMDM Disease mutations51545
Blocks (Seattle)ZNF581
SuperfamilyQ9P0T4
Human Protein AtlasENSG00000171425
Peptide AtlasQ9P0T4
HPRD15858
IPIIPI00009777   
Protein Interaction databases
DIP (DOE-UCLA)Q9P0T4
IntAct (EBI)Q9P0T4
FunCoupENSG00000171425
BioGRIDZNF581
STRING (EMBL)ZNF581
ZODIACZNF581
Ontologies - Pathways
QuickGOQ9P0T4
Ontology : AmiGODNA binding  protein binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  protein binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF581
Atlas of Cancer Signalling NetworkZNF581
Wikipedia pathwaysZNF581
Orthology - Evolution
OrthoDB51545
GeneTree (enSembl)ENSG00000171425
Phylogenetic Trees/Animal Genes : TreeFamZNF581
HOVERGENQ9P0T4
HOGENOMQ9P0T4
Homologs : HomoloGeneZNF581
Homology/Alignments : Family Browser (UCSC)ZNF581
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF581 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF581
dbVarZNF581
ClinVarZNF581
1000_GenomesZNF581 
Exome Variant ServerZNF581
ExAC (Exome Aggregation Consortium)ZNF581 (select the gene name)
Genetic variants : HAPMAP51545
Genomic Variants (DGV)ZNF581 [DGVbeta]
DECIPHERZNF581 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF581 
Mutations
ICGC Data PortalZNF581 
TCGA Data PortalZNF581 
Broad Tumor PortalZNF581
OASIS PortalZNF581 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF581  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF581
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF581
DgiDB (Drug Gene Interaction Database)ZNF581
DoCM (Curated mutations)ZNF581 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF581 (select a term)
intoGenZNF581
Cancer3DZNF581(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZNF581
Genetic Testing Registry ZNF581
NextProtQ9P0T4 [Medical]
TSGene51545
GENETestsZNF581
Target ValidationZNF581
Huge Navigator ZNF581 [HugePedia]
snp3D : Map Gene to Disease51545
BioCentury BCIQZNF581
ClinGenZNF581
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51545
Chemical/Pharm GKB GenePA134899657
Clinical trialZNF581
Miscellaneous
canSAR (ICR)ZNF581 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF581
EVEXZNF581
GoPubMedZNF581
iHOPZNF581
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:45:00 CEST 2017

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