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ZNF583 (zinc finger protein 583)

Identity

Alias_symbol (synonym)FLJ31030
Other alias-
HGNC (Hugo) ZNF583
LocusID (NCBI) 147949
Atlas_Id 76261
Location 19q13.43  [Link to chromosome band 19q13]
Location_base_pair Starts at 56404014 and ends at 56425031 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF583   26427
Cards
Entrez_Gene (NCBI)ZNF583  147949  zinc finger protein 583
Aliases
GeneCards (Weizmann)ZNF583
Ensembl hg19 (Hinxton)ENSG00000198440 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000198440 [Gene_View]  chr19:56404014-56425031 [Contig_View]  ZNF583 [Vega]
ICGC DataPortalENSG00000198440
TCGA cBioPortalZNF583
AceView (NCBI)ZNF583
Genatlas (Paris)ZNF583
WikiGenes147949
SOURCE (Princeton)ZNF583
Genetics Home Reference (NIH)ZNF583
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF583  -     chr19:56404014-56425031 +  19q13.43   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF583  -     19q13.43   [Description]    (hg19-Feb_2009)
EnsemblZNF583 - 19q13.43 [CytoView hg19]  ZNF583 - 19q13.43 [CytoView hg38]
Mapping of homologs : NCBIZNF583 [Mapview hg19]  ZNF583 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF024698 AK055592 AL833236 BC111772 BP247825
RefSeq transcript (Entrez)NM_001159860 NM_001159861 NM_152478
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF583
Cluster EST : UnigeneHs.745489 [ NCBI ]
CGAP (NCI)Hs.745489
Alternative Splicing GalleryENSG00000198440
Gene ExpressionZNF583 [ NCBI-GEO ]   ZNF583 [ EBI - ARRAY_EXPRESS ]   ZNF583 [ SEEK ]   ZNF583 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF583 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)147949
GTEX Portal (Tissue expression)ZNF583
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96ND8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96ND8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96ND8
Splice isoforms : SwissVarQ96ND8
PhosPhoSitePlusQ96ND8
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)    zf-C2H2 (PF00096)   
Domain families : Pfam (NCBI)pfam01352    pfam00096   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF583
DMDM Disease mutations147949
Blocks (Seattle)ZNF583
SuperfamilyQ96ND8
Human Protein AtlasENSG00000198440
Peptide AtlasQ96ND8
HPRD15860
IPIIPI00043606   IPI01011532   IPI01010574   IPI01015367   
Protein Interaction databases
DIP (DOE-UCLA)Q96ND8
IntAct (EBI)Q96ND8
FunCoupENSG00000198440
BioGRIDZNF583
STRING (EMBL)ZNF583
ZODIACZNF583
Ontologies - Pathways
QuickGOQ96ND8
Ontology : AmiGODNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF583
Atlas of Cancer Signalling NetworkZNF583
Wikipedia pathwaysZNF583
Orthology - Evolution
OrthoDB147949
GeneTree (enSembl)ENSG00000198440
Phylogenetic Trees/Animal Genes : TreeFamZNF583
HOVERGENQ96ND8
HOGENOMQ96ND8
Homologs : HomoloGeneZNF583
Homology/Alignments : Family Browser (UCSC)ZNF583
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF583 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF583
dbVarZNF583
ClinVarZNF583
1000_GenomesZNF583 
Exome Variant ServerZNF583
ExAC (Exome Aggregation Consortium)ZNF583 (select the gene name)
Genetic variants : HAPMAP147949
Genomic Variants (DGV)ZNF583 [DGVbeta]
DECIPHERZNF583 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF583 
Mutations
ICGC Data PortalZNF583 
TCGA Data PortalZNF583 
Broad Tumor PortalZNF583
OASIS PortalZNF583 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF583  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF583
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF583
DgiDB (Drug Gene Interaction Database)ZNF583
DoCM (Curated mutations)ZNF583 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF583 (select a term)
intoGenZNF583
Cancer3DZNF583(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZNF583
Genetic Testing Registry ZNF583
NextProtQ96ND8 [Medical]
TSGene147949
GENETestsZNF583
Target ValidationZNF583
Huge Navigator ZNF583 [HugePedia]
snp3D : Map Gene to Disease147949
BioCentury BCIQZNF583
ClinGenZNF583
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD147949
Chemical/Pharm GKB GenePA134982111
Clinical trialZNF583
Miscellaneous
canSAR (ICR)ZNF583 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF583
EVEXZNF583
GoPubMedZNF583
iHOPZNF583
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:45:00 CEST 2017

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