Atlas of Genetics and Cytogenetics in Oncology and Haematology

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   
X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

ZNF585B (zinc finger protein 585B)

Identity

Alias (NCBI)SZFP41
Zfp27
HGNC (Hugo) ZNF585B
HGNC Alias symbFLJ14928
SZFP41
LocusID (NCBI) 92285
Atlas_Id 54810
Location 19q13.12  [Link to chromosome band 19q13]
Location_base_pair Starts at 37181579 and ends at 37210536 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
NFKBID (19q13.12) / ZNF585B (19q13.12)ZNF585B (19q13.12) / C2CD2L (11q23.3)ZNF585B (19q13.12) / CACNA1G (17q21.33)
NFKBID 19q13.12 / ZNF585B 19q13.12ZNF585B 19q13.12 / C2CD2L 11q23.3ZNF585B 19q13.12 / CACNA1G 17q21.33

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

Other Leukemias implicated (Data extracted from papers in the Atlas) [ 1 ]
  t(11;19)(q23;q13) ZNF585B/C2CD2L

Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 2 ]
  t(17;19)(q21;q13) ZNF585B/CACNA1G
NFKBID/ZNF585B (19q13)

External links

Nomenclature
HGNC (Hugo)ZNF585B   30948
Cards
Entrez_Gene (NCBI)ZNF585B    zinc finger protein 585B
AliasesSZFP41; Zfp27
GeneCards (Weizmann)ZNF585B
Ensembl hg19 (Hinxton)ENSG00000245680 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000245680 [Gene_View]  ENSG00000245680 [Sequence]  chr19:37181579-37210536 [Contig_View]  ZNF585B [Vega]
ICGC DataPortalENSG00000245680
TCGA cBioPortalZNF585B
AceView (NCBI)ZNF585B
Genatlas (Paris)ZNF585B
SOURCE (Princeton)ZNF585B
Genetics Home Reference (NIH)ZNF585B
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF585B  -     chr19:37181579-37210536 -  19q13.12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF585B  -     19q13.12   [Description]    (hg19-Feb_2009)
GoldenPathZNF585B - 19q13.12 [CytoView hg19]  ZNF585B - 19q13.12 [CytoView hg38]
ImmunoBaseENSG00000245680
genome Data Viewer NCBIZNF585B [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AK027834 AK090574 AK091586 AK094989 AY147015
RefSeq transcript (Entrez)NM_152279
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF585B
Alternative Splicing GalleryENSG00000245680
Gene ExpressionZNF585B [ NCBI-GEO ]   ZNF585B [ EBI - ARRAY_EXPRESS ]   ZNF585B [ SEEK ]   ZNF585B [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF585B [ Firebrowse - Broad ]
GenevisibleExpression of ZNF585B in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)92285
GTEX Portal (Tissue expression)ZNF585B
Human Protein AtlasENSG00000245680-ZNF585B [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ52M93   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ52M93  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ52M93
Splice isoforms : SwissVarQ52M93
PhosPhoSitePlusQ52M93
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    KRAB_dom_sf    Znf_C2H2_sf    Znf_C2H2_type   
Domain families : Pfam (Sanger)KRAB (PF01352)    zf-C2H2 (PF00096)   
Domain families : Pfam (NCBI)pfam01352    pfam00096   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF585B
Blocks (Seattle)ZNF585B
SuperfamilyQ52M93
Human Protein Atlas [tissue]ENSG00000245680-ZNF585B [tissue]
Peptide AtlasQ52M93
HPRD18354
IPIIPI00217980   IPI00167167   IPI00643095   IPI00976236   IPI00975490   IPI00983226   
Protein Interaction databases
DIP (DOE-UCLA)Q52M93
IntAct (EBI)Q52M93
BioGRIDZNF585B
STRING (EMBL)ZNF585B
ZODIACZNF585B
Ontologies - Pathways
QuickGOQ52M93
Ontology : AmiGOnucleic acid binding  nucleus  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBInucleic acid binding  nucleus  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF585B
Atlas of Cancer Signalling NetworkZNF585B
Wikipedia pathwaysZNF585B
Orthology - Evolution
OrthoDB92285
GeneTree (enSembl)ENSG00000245680
Phylogenetic Trees/Animal Genes : TreeFamZNF585B
HOGENOMQ52M93
Homologs : HomoloGeneZNF585B
Homology/Alignments : Family Browser (UCSC)ZNF585B
Gene fusions - Rearrangements
Fusion : MitelmanNFKBID/ZNF585B [19q13.12/19q13.12]  
Fusion : MitelmanZNF585B/C2CD2L [19q13.12/11q23.3]  
Fusion : MitelmanZNF585B/CACNA1G [19q13.12/17q21.33]  
Fusion PortalNFKBID 19q13.12 ZNF585B 19q13.12 LUAD
Fusion PortalZNF585B 19q13.12 C2CD2L 11q23.3 LAML
Fusion PortalZNF585B 19q13.12 CACNA1G 17q21.33 LUAD
Fusion : QuiverZNF585B
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF585B [hg38]
dbVarZNF585B
ClinVarZNF585B
MonarchZNF585B
1000_GenomesZNF585B 
Exome Variant ServerZNF585B
GNOMAD BrowserENSG00000245680
Varsome BrowserZNF585B
Genomic Variants (DGV)ZNF585B [DGVbeta]
DECIPHERZNF585B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF585B 
Mutations
ICGC Data PortalZNF585B 
TCGA Data PortalZNF585B 
Broad Tumor PortalZNF585B
OASIS PortalZNF585B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF585B  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DZNF585B
Mutations and Diseases : HGMDZNF585B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF585B
DgiDB (Drug Gene Interaction Database)ZNF585B
DoCM (Curated mutations)ZNF585B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF585B (select a term)
intoGenZNF585B
Cancer3DZNF585B(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETZNF585B
MedgenZNF585B
Genetic Testing Registry ZNF585B
NextProtQ52M93 [Medical]
GENETestsZNF585B
Target ValidationZNF585B
Huge Navigator ZNF585B [HugePedia]
ClinGenZNF585B
Clinical trials, drugs, therapy
MyCancerGenomeZNF585B
Protein Interactions : CTD
Pharm GKB GenePA134925877
PharosQ52M93
Clinical trialZNF585B
Miscellaneous
canSAR (ICR)ZNF585B (select the gene name)
HarmonizomeZNF585B
DataMed IndexZNF585B
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXZNF585B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri Jan 1 18:45:24 CET 2021
Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.