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ZNF585B (zinc finger protein 585B)

Identity

Alias_symbol (synonym)FLJ14928
SZFP41
Other alias
HGNC (Hugo) ZNF585B
LocusID (NCBI) 92285
Atlas_Id 54810
Location 19q13.12  [Link to chromosome band 19q13]
Location_base_pair Starts at 37181579 and ends at 37210549 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
NFKBID (19q13.12) / ZNF585B (19q13.12)ZNF585B (19q13.12) / C2CD2L (11q23.3)ZNF585B (19q13.12) / CACNA1G (17q21.33)
NFKBID 19q13.12 / ZNF585B 19q13.12ZNF585B 19q13.12 / C2CD2L 11q23.3ZNF585B 19q13.12 / CACNA1G 17q21.33

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF585B   30948
Cards
Entrez_Gene (NCBI)ZNF585B  92285  zinc finger protein 585B
AliasesSZFP41
GeneCards (Weizmann)ZNF585B
Ensembl hg19 (Hinxton)ENSG00000245680 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000245680 [Gene_View]  chr19:37181579-37210549 [Contig_View]  ZNF585B [Vega]
ICGC DataPortalENSG00000245680
TCGA cBioPortalZNF585B
AceView (NCBI)ZNF585B
Genatlas (Paris)ZNF585B
WikiGenes92285
SOURCE (Princeton)ZNF585B
Genetics Home Reference (NIH)ZNF585B
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF585B  -     chr19:37181579-37210549 -  19q13.12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF585B  -     19q13.12   [Description]    (hg19-Feb_2009)
EnsemblZNF585B - 19q13.12 [CytoView hg19]  ZNF585B - 19q13.12 [CytoView hg38]
Mapping of homologs : NCBIZNF585B [Mapview hg19]  ZNF585B [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK027834 AK090574 AK091586 AK094989 AY147015
RefSeq transcript (Entrez)NM_152279
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF585B
Cluster EST : UnigeneHs.390568 [ NCBI ]
CGAP (NCI)Hs.390568
Alternative Splicing GalleryENSG00000245680
Gene ExpressionZNF585B [ NCBI-GEO ]   ZNF585B [ EBI - ARRAY_EXPRESS ]   ZNF585B [ SEEK ]   ZNF585B [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF585B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)92285
GTEX Portal (Tissue expression)ZNF585B
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ52M93   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ52M93  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ52M93
Splice isoforms : SwissVarQ52M93
PhosPhoSitePlusQ52M93
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)    zf-C2H2 (PF00096)   
Domain families : Pfam (NCBI)pfam01352    pfam00096   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF585B
DMDM Disease mutations92285
Blocks (Seattle)ZNF585B
SuperfamilyQ52M93
Human Protein AtlasENSG00000245680
Peptide AtlasQ52M93
HPRD18354
IPIIPI00217980   IPI00167167   IPI00643095   IPI00976236   IPI00975490   IPI00983226   
Protein Interaction databases
DIP (DOE-UCLA)Q52M93
IntAct (EBI)Q52M93
FunCoupENSG00000245680
BioGRIDZNF585B
STRING (EMBL)ZNF585B
ZODIACZNF585B
Ontologies - Pathways
QuickGOQ52M93
Ontology : AmiGOnucleic acid binding  transcription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBInucleic acid binding  transcription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF585B
Atlas of Cancer Signalling NetworkZNF585B
Wikipedia pathwaysZNF585B
Orthology - Evolution
OrthoDB92285
GeneTree (enSembl)ENSG00000245680
Phylogenetic Trees/Animal Genes : TreeFamZNF585B
HOVERGENQ52M93
HOGENOMQ52M93
Homologs : HomoloGeneZNF585B
Homology/Alignments : Family Browser (UCSC)ZNF585B
Gene fusions - Rearrangements
Fusion : MitelmanNFKBID/ZNF585B [19q13.12/19q13.12]  [t(19;19)(q13;q13)]  
Fusion : MitelmanZNF585B/C2CD2L [19q13.12/11q23.3]  [t(11;19)(q23;q13)]  
Fusion : MitelmanZNF585B/CACNA1G [19q13.12/17q21.33]  [t(17;19)(q21;q13)]  
Fusion: TCGANFKBID 19q13.12 ZNF585B 19q13.12 LUAD
Fusion: TCGAZNF585B 19q13.12 C2CD2L 11q23.3 LAML
Fusion: TCGAZNF585B 19q13.12 CACNA1G 17q21.33 LUAD
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF585B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF585B
dbVarZNF585B
ClinVarZNF585B
1000_GenomesZNF585B 
Exome Variant ServerZNF585B
ExAC (Exome Aggregation Consortium)ZNF585B (select the gene name)
Genetic variants : HAPMAP92285
Genomic Variants (DGV)ZNF585B [DGVbeta]
DECIPHERZNF585B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF585B 
Mutations
ICGC Data PortalZNF585B 
TCGA Data PortalZNF585B 
Broad Tumor PortalZNF585B
OASIS PortalZNF585B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF585B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF585B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF585B
DgiDB (Drug Gene Interaction Database)ZNF585B
DoCM (Curated mutations)ZNF585B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF585B (select a term)
intoGenZNF585B
Cancer3DZNF585B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZNF585B
Genetic Testing Registry ZNF585B
NextProtQ52M93 [Medical]
TSGene92285
GENETestsZNF585B
Target ValidationZNF585B
Huge Navigator ZNF585B [HugePedia]
snp3D : Map Gene to Disease92285
BioCentury BCIQZNF585B
ClinGenZNF585B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD92285
Chemical/Pharm GKB GenePA134925877
Clinical trialZNF585B
Miscellaneous
canSAR (ICR)ZNF585B (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF585B
EVEXZNF585B
GoPubMedZNF585B
iHOPZNF585B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 13:03:51 CEST 2017

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