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ZNF586 (zinc finger protein 586)

Identity

Alias_symbol (synonym)FLJ20070
Other alias-
HGNC (Hugo) ZNF586
LocusID (NCBI) 54807
Atlas_Id 76264
Location 19q13.43  [Link to chromosome band 19q13]
Location_base_pair Starts at 58281020 and ends at 58291984 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
ZNF586 (19q13.43) / SRC (20q11.23)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF586   25949
Cards
Entrez_Gene (NCBI)ZNF586  54807  zinc finger protein 586
Aliases
GeneCards (Weizmann)ZNF586
Ensembl hg19 (Hinxton)ENSG00000083828 [Gene_View]  chr19:58281020-58291984 [Contig_View]  ZNF586 [Vega]
Ensembl hg38 (Hinxton)ENSG00000083828 [Gene_View]  chr19:58281020-58291984 [Contig_View]  ZNF586 [Vega]
ICGC DataPortalENSG00000083828
TCGA cBioPortalZNF586
AceView (NCBI)ZNF586
Genatlas (Paris)ZNF586
WikiGenes54807
SOURCE (Princeton)ZNF586
Genetics Home Reference (NIH)ZNF586
Genomic and cartography
GoldenPath hg19 (UCSC)ZNF586  -     chr19:58281020-58291984 +  19q13.43   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ZNF586  -     19q13.43   [Description]    (hg38-Dec_2013)
EnsemblZNF586 - 19q13.43 [CytoView hg19]  ZNF586 - 19q13.43 [CytoView hg38]
Mapping of homologs : NCBIZNF586 [Mapview hg19]  ZNF586 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB074270 AI962754 AK000077 AK095993 AK300419
RefSeq transcript (Entrez)NM_001077426 NM_001204814 NM_017652
RefSeq genomic (Entrez)NC_000019 NC_018930 NT_011109 NW_004929415
Consensus coding sequences : CCDS (NCBI)ZNF586
Cluster EST : UnigeneHs.625133 [ NCBI ]
CGAP (NCI)Hs.625133
Alternative Splicing GalleryENSG00000083828
Gene ExpressionZNF586 [ NCBI-GEO ]   ZNF586 [ EBI - ARRAY_EXPRESS ]   ZNF586 [ SEEK ]   ZNF586 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF586 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54807
GTEX Portal (Tissue expression)ZNF586
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NXT0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NXT0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NXT0
Splice isoforms : SwissVarQ9NXT0
PhosPhoSitePlusQ9NXT0
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Krueppel-associated_box    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)   
Domain families : Pfam (NCBI)pfam01352   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF586
DMDM Disease mutations54807
Blocks (Seattle)ZNF586
SuperfamilyQ9NXT0
Human Protein AtlasENSG00000083828
Peptide AtlasQ9NXT0
HPRD15863
IPIIPI00793187   IPI00796874   IPI00942846   IPI00646913   IPI01015942   
Protein Interaction databases
DIP (DOE-UCLA)Q9NXT0
IntAct (EBI)Q9NXT0
FunCoupENSG00000083828
BioGRIDZNF586
STRING (EMBL)ZNF586
ZODIACZNF586
Ontologies - Pathways
QuickGOQ9NXT0
Ontology : AmiGODNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF586
Atlas of Cancer Signalling NetworkZNF586
Wikipedia pathwaysZNF586
Orthology - Evolution
OrthoDB54807
GeneTree (enSembl)ENSG00000083828
Phylogenetic Trees/Animal Genes : TreeFamZNF586
HOVERGENQ9NXT0
HOGENOMQ9NXT0
Homologs : HomoloGeneZNF586
Homology/Alignments : Family Browser (UCSC)ZNF586
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF586 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF586
dbVarZNF586
ClinVarZNF586
1000_GenomesZNF586 
Exome Variant ServerZNF586
ExAC (Exome Aggregation Consortium)ZNF586 (select the gene name)
Genetic variants : HAPMAP54807
Genomic Variants (DGV)ZNF586 [DGVbeta]
DECIPHER (Syndromes)19:58281020-58291984  ENSG00000083828
CONAN: Copy Number AnalysisZNF586 
Mutations
ICGC Data PortalZNF586 
TCGA Data PortalZNF586 
Broad Tumor PortalZNF586
OASIS PortalZNF586 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF586  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF586
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF586
DgiDB (Drug Gene Interaction Database)ZNF586
DoCM (Curated mutations)ZNF586 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF586 (select a term)
intoGenZNF586
Cancer3DZNF586(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZNF586
Genetic Testing Registry ZNF586
NextProtQ9NXT0 [Medical]
TSGene54807
GENETestsZNF586
Huge Navigator ZNF586 [HugePedia]
snp3D : Map Gene to Disease54807
BioCentury BCIQZNF586
ClinGenZNF586
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54807
Chemical/Pharm GKB GenePA134946358
Clinical trialZNF586
Miscellaneous
canSAR (ICR)ZNF586 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF586
EVEXZNF586
GoPubMedZNF586
iHOPZNF586
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:53:25 CET 2017

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